1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGGTTCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGGTACTGGGGAGAGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgttattgcagtgcagcatttatcagaatgtcacttgtcccaagtaccattgaaaagttcataggcaggtaaagtcaattgtagtgtaattgtaa...
species | Zea mays |
transcript | GRMZM5G840582_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAG ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTEST: gi|32850940|gb|CD990621.1|CD990621
genomic: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgtta ... gagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTT
EST: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAG ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTEST: gi|91054117|gb|EB164535.1|EB164535
genomic: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgtta ... gagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTT
EST: CAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAG ACAGTAGATGAGATATACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTEST: gi|7216933|gb|AW563070.1|AW563070
genomic: CAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgtta ... gagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTT
EST: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAG ACAGTAGATGAGATATACAAGGTTGCATCAATAGTACTGAGTCCGAATGTT
genomic: AGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgtta ... gagcttgcagACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGTTCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGGTACTGGGGAGAGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgttattgcagtgcagcatttatcagaatgtcacttgtcccaagtaccattgaaaagttcataggcaggtaaagtcaattgtagtgtaattgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA