1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGCTCGCTTGTAAATATGAGGAGGTATCTGTTCCAGTTGTTGAGGACCTTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccactaaatgcaatttgcactcatactgaatgcatgcctggttctttaatactgcattatctaaacgtacaatgatcatagatagatccatgta...
species | Zea mays |
transcript | GRMZM2G138886_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|84908772|gb|DW404650.1|DW404650
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCCEST: gi|50324449|gb|CO519575.1|CO519575
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACC-
EST: AAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|76283025|gb|DV022593.1|DV022593
genomic: AAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|211247237|gb|FL156677.1|FL156677
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|211247239|gb|FL156679.1|FL156679
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTCTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|61118386|gb|DN559347.1|DN559347
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCTEST: gi|30307156|gb|CD001829.1|CD001829
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
EST: TTGTGCTGATATCTGCCCGTGCCTACACAAAAGGGCAATTTTTAGAAATG GAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACCCCT
genomic: TTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccac ... gattgagcagGAAAAGTTGATTCTGAACACGCTGCAGTTCAACATGTCTGTTCCAACACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTCGCTTGTAAATATGAGGAGGTATCTGTTCCAGTTGTTGAGGACCTTGTGCTGATATCTGACCGTGCCTACACAAAAGGGCAAATTTTAGAAATGgtaatcccactaaatgcaatttgcactcatactgaatgcatgcctggttctttaatactgcattatctaaacgtacaatgatcatagatagatccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT