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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACATGTCCTGGAATCAGGATCAATTGATACGGTTGGCACCGTTGgtatgttttataaaccatatttagctttttacataaaatctatcattccatcctgtttgtgacatcataatatcatgtaatacatttggactaaatatgt...

Basic information

species Zea mays
transcript GRMZM2G130034_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130034_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 5'ss of exon 8
AAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACATGTCCTGGAATCAGGATCAATTGATACGGTTGGCACCGTTGgtatgttttataaaccatatttagctttttacataaaatctatcattccatcctgtttgtgacatcataatatcatgtaatacatttggac-taaatatgt-
|||||||||||||||||| |||||||| || ||||||||||| |||||||| ||  |||||||||||||||||||||| ||||| || ||||||||| || || ||    ||||   ||| |   |  ||| ||||||||  || ||  |||||  |  |||||     || || ||| |||| || || ||  
AAATGATGCTGGACTGGCGGCAGCTGAGTTGGCATTAGCAGTTGAGAAACACGTTTTGGAATCAGGATCAATTGATACTGTTGGGACAGTTGgtatgcttgatgaaattgattttattttctg--ttgaatatatcattctttcatgactgtgatgttttaatactccatagtaaattaggacatacatgtgcc

upper sequence: GRMZM2G130034_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 8
AAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACATGTCCTGGAATCAGGATCAATTGATACGGTTGGCACCGTTGgtatgttttataaaccatatttagctttttacataaaatctatcattccatcctgtttgtgacatcataatatcatgtaatacatttggac-taaatatgt----
||||||||| ||| ||||||| || || |||||| |||| || |||||||||||  | ||||| ||||| |||||||| ||||| || || |||  ||  | |   |   |||   | |  |    ||  |  |  | |  |   || || | ||||  | | ||  | | ||| || | ||  |  ||||||    
AAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGGgtgagtcatgttttcttcatt---cctgatgtccaag-tgcaggaatatagtttggttattacatactga-attttattatatatattgatatttatatgtatct