1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCGCAGGTGGCGGGGGACCGGAAAGAAGAAGATCCTTTCCACCCGTGGCGTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacctggtgaaagacatgcggagctgtagctagacagctagctgatctagtagcagcgcacgccttgcag
species | Zea mays |
transcript | GRMZM2G092497_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGAEST: gi|12047158|gb|BF729297.1|BF729297
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
EST: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGAEST: gi|78180603|gb|DV550931.1|DV550931
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
EST: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAG GAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
genomic: GTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacct ... cgccttgcagGAAGGTCGTGGAGCACATCATCCTGCTCAGAGCCAAGCCCAACATCTCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCAGGTGGCGGGGGACCGGAAAGAAGAAGATCCTTTCCACCCGTGGCGTGCTTGAGTCCAGAAACGGCGCACATCCTGGTGGCCTTATGAAGAGAAGgtgagaacctggtgaaagacatgcggagctgtagctagacagctagctgatctagtagcagcgcacgccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA