1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttccacaattggtttgttgctgtatccacatatttgtattgctggaaatgtagccagtgactttttattgaaaaaaaaacttccattccatcattattaacgtgaaagttcactcttttcag
species | Zea mays |
transcript | GRMZM5G864166_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGGTGCA GTTAGTCTTCCTGATATAGGEST: gi|71772666|gb|DR970593.1|DR970593
genomic: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGG
EST: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATAEST: gi|86469098|gb|DY235468.1|DY235468
genomic: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATA
EST: ATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATATA-GTGAAATCAACTGTTGACCTCATGAACACAATEST: gi|50326456|gb|CO521582.1|CO521582
genomic: ATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGGTG-AATCAACTGTTGACCTCATGAACACAAT
EST: GGTCCATCAATAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATAEST: gi|32864298|gb|CF003980.1|CF003980
genomic: GGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATA
EST: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATATAGGTGAATCAACTGTTGATCTCATGAACGCAATAEST: gi|50335340|gb|CO530466.1|CO530466
genomic: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATA
EST: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATAEST: gi|78088237|gb|DV516630.1|DV516630
genomic: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATATAGGTGAATCAACTGTTGACCTCATGAACACAATA
EST: CCTCTGGGACAACTTGAGTGGGTCCATNCA-TAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGEST: gi|50335836|gb|CO530962.1|CO530962
genomic: CCTCTGGGACAACTTGAGTGGGTCCAT-CAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTG
EST: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA GTTAGTCTTCCTGATAT
genomic: CCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttcca ... ctcttttcagGTTAGTCTTCCTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCAgtaggttccacaattggtttgttgctgtatccacatatttgtattgctggaaatgtagccagtgactttttattgaaaaaaaaacttccattccatcattattaacgtgaaagttcactcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG