1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCCGTGGAAATGCTGGAAGCCACAATCTCCAATTCAGTGTTGAAACACTTGAGTCACTGATGAAACTAACAAAAGAAGgtacatgtttagacaaatatttgggccttcttcaaactagttgtttatttgggatgatgatttgtgccttcttggaaaattagtaaaatgatttacaacaattttaaaacatattttagtgaactcactattgttttcacaacattag
species | Zea mays |
transcript | GRMZM2G054663_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGAAACTAACAAAAGAAG GCATCAAGATGAAGGTTCCACGGTATGACAAGEST: gi|6194708|gb|AW146812.1|AW146812
genomic: TGATGAAACTAACAAAAGAAGgtacatgttt ... acaacattagGCATCAAGATGAAGGTTCCACGGTATGACAAG
EST: CCAATTCAGTGTTGAAACACTTGAGTCACTGATGAAACTAACAAAAGAAG GCATCAAGATGAAGGTTCCACGGTATGACAAGEST: gi|211396867|gb|FL456752.1|FL456752
genomic: CCAATTCAGTGTTGAAACACTTGAGTCACTGATGAAACTAACAAAAGAAGgtacatgttt ... acaacattagGCATCAAGATGAAGGTTCCACGGTATGACAAG
EST: GAAACTAACAAAAGAAG GCATCAAGATGAAGGTTCCACGGTATGACAAG
genomic: GAAACTAACAAAAGAAGgtacatgttt ... acaacattagGCATCAAGATGAAGGTTCCACGGTATGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGTGGAAATGCTGGAAGCCACAATCTCCAATTCAGTGTTGAAACACTTGAGTCACTGATGAAACTAACAAAAGAAGgtacatgtttagacaaatatttgggccttcttcaaactagttgtttatttgggatgatgatttgtgccttcttggaaaattagtaaaatgatttacaacaattttaaaacatattttagtgaactcactattgttttcacaacattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG