1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAAAATATTGGATTCACAGGAGTACTTCGGCTCATATTTAAACCGCTGGTGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatttttctttcagatctaattctcctcgaaatgactctagtagactgcatgttttgattagtttgatttcag
species | Zea mays |
transcript | GRMZM2G049347_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGA-G AACAAGGTGAAATTTACCEST: gi|149108271|gb|EE292611.2|EE292611
genomic: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatt ... ttgatttcagAGCAAGGTGGAATTTACC
EST: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGGTCTTTAAGGGAGAAG AGCAAGGTGGAATTTACCCTCAAGGTTATTGGTGGGCGAAATGACTGCTATEST: gi|148971875|gb|EE022637.2|EE022637
genomic: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatt ... ttgatttcagAGCAAGGTGGAATTTACCCTCAAGGTTATTGGTGG-CGAAATGACTGCTAT
EST: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAA AACAAGGTGGAATTTACCEST: gi|149000007|gb|EE037098.2|EE037098
genomic: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatt ... ttgatttcagAGCAAGGTGGAATTTACC
EST: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAG AGCAAGGTGGAATTTACCCTCAAGGGTTAT-GGTGGCGAAATGACTGCTAT
genomic: TGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatt ... ttgatttcagAGCAAGGTGGAATTTACCCTCAAGG-TTATTGGTGGCGAAATGACTGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAATATTGGATTCACAGGAGTACTTCGGCTCATATTTAAACCGCTGGTGTCTGAATTCCCCTGTTTTGGAGCTGTTTGCTGTTCTTTAAGGGAGAAGgtatcacatttttctttcagatctaattctcctcgaaatgactctagtagactgcatgttttgattagtttgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA