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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcacttacttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag

Basic information

species Zea mays
transcript GRMZM2G177026_T02
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 5
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcacttacttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag
| |||   || ||||| || || ||||| || |||||||||||| | |||||| |||||||||| ||| |||||||||| || |||||||| ||||| |||||||||  |   || |    ||| |||   ||     | ||||    | || || |     |||| ||| | ||         || || | || |||||||||||  |||     
TGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTTGCTGAACATCTATATGCAAGCAGGGCTCACAGCTCTGAAGACACCgtatcctt-cgcctgatca--ttattttccgcttca--cctttaccatttaa-tataaaccactagcattgtatt-------acattctcttttttccttgaccatc-attag---

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G38660.1 (Glycine max), 5'ss of exon 5
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcactt---acttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag
| |||   ||||| || || || ||||||||||||||||||||  |||||||  |||| || || ||||||||||| |||||  | ||||||||||| |||||||||   |    ||  |||    | | |  ||||    ||||| ||  |    |  |   || |   ||   | |  ||     | ||  |     | ||                
TGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCgtatcctttaacaacttaaactgtagattatcatctagaaactttttttttt----tctaaaatgtttacatacctataattgaaacaccccttccaccctttt---------------

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G43910.1 (Glycine max), 5'ss of exon 5
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcacttacttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag
| |||   ||||| || || || ||||||||||||||||||||  |||||||  |||| || || ||||||||||| |||||  | ||||||||||| |||||||||      | ||| |  | |||   |  ||      | ||||  | |   |      |   |   ||   | |||      | || | | |||||  || |||        
TGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCgtatcctt-----tttttaaaatgcttgcatacata-----taattgaaacaccccctccaccctttccaataaatcttaaaaccacttggactttccttatccttttga------

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G55070.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcc-tcgca-tgtgtttcacttacttttgtctatggtct-tttattgc---taaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag---------------------
||||    || || ||||| |||||||||||||||||||||||  | || ||  |  ||||||| ||  | || |||||| || | || || || || ||||| |  ||  | | | |   | ||  | || |  || |||| |||  |||   | | | |  |   |  ||||   |||| |  |||  | |||    ||    | ||   |   ||                         
TTGATCAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATCTACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCgtaacgatcaaactctatcaaaattgatgtttttgattgtctattttctgcatctgataaaggggcagaaagtaa-gttttcgaaatgacaccctaatgtgattcttactggtgggttgcgtttgtaccttgatatgactcag

upper sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0067g03560.t01 (Vitis vinifera), 5'ss of exon 5
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcacttacttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag
| |||   ||||| || || || || | ||||||||||||||| || |||||  ||||||| |||||||||||||||||| || | ||||| || || ||||||||||     | |   | |   | | ||   | | |||    | |||       | ||   |||   |||   || | |||    | | |||   |||   |           
TGGACCAGTTCAAACAGGAATTCTGTAGGTTATATGGCATGACTCTTGAGCCTTTGCTGAATATATATCTGCAAGCAGGCTTGTCTGCTCTAAAAACTCCgtatcctcattcatttactaat--atatcgttgcttgccttcacatactagttagtggctta--agtgccattacagtca-ggtcatatattttgaatttgcaaa-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105967|gb|DV524385.1|DV524385
EST:     GCAGCCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: GCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|6851574|gb|AW352584.1|AW352584
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         ATTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|149055252|gb|EE156180.2|EE156180
EST:     CCGCTGCTGAACATATATTTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTTTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTTTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|44681897|gb|CK786945.1|CK786945
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|28986997|gb|CB351413.1|CB351413
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|211099632|gb|FL031900.1|FL031900
EST:     ATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: ATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|29544151|gb|CB604531.1|CB604531
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|71767836|gb|DR965773.1|DR965773
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|74233968|gb|DT641882.1|DT641882
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|211099634|gb|FL031902.1|FL031902
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|71768608|gb|DR966545.1|DR966545
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|101391428|gb|EB817649.1|EB817649
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGTTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|211099631|gb|FL031899.1|FL031899
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|60343650|gb|DN210623.1|DN210623
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|60338261|gb|DN205234.1|DN205234
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|50328588|gb|CO523714.1|CO523714
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|71427364|gb|DR808414.1|DR808414
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGTTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTTTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|78113218|gb|DV531612.1|DV531612
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGTTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTTTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|60345773|gb|DN212746.1|DN212746
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTTTGTTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTTTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|76921420|gb|DV168575.1|DV168575
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGTTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTTTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|91872489|gb|EB402446.1|EB402446
EST:     CCGCTGCTGAACATATATTTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTTTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTTTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|86474472|gb|DY240842.1|DY240842
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGTTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|71768607|gb|DR966544.1|DR966544
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|76013349|gb|DT940519.1|DT940519
EST:     CCGCTGCTGAACATATATTTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTTTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTTTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|211125054|gb|FL439189.1|FL439189
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|14244938|gb|BG842876.2|BG842876
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|14242967|gb|BG840141.2|BG840141
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTTTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|211099633|gb|FL031901.1|FL031901
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|6993916|gb|AW453130.1|AW453130
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         ATTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|37394100|gb|CF634320.1|CF634320
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|19350920|gb|BM895452.1|BM895452
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         ATTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|76013373|gb|DT940543.1|DT940543
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
EST: gi|78090100|gb|DV518474.1|DV518474
EST:     CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCC                         GTTCTGCTTTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG
genomic: CCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgc ... ttatttaaagGTTCTGCTCTGAGGGTAGCTGTCCCAAAGAAGACCCCTTGTCTCTGGAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcctcgcatgtgtttcacttacttttgtctatggtcttttattgctaaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC