1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGCGTTGAGTACATGCCCTTCCTCCTGTCGCTGGTGAGCTTCCTCAACGGCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatcaccggcctctcatgttaacaaaagcgttacagaattaatataattccacctccaagttgagtatagtctcatctcagtttttaaaatacctgcaatgcag
species | Zea mays |
transcript | GRMZM2G157675_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTNTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|211162570|gb|FL132729.1|FL132729
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|211162573|gb|FL132732.1|FL132732
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGSGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|28188031|gb|CB179641.1|CB179641
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCATCCAGCTGATCCTCTATEST: gi|211388914|gb|FL454573.1|FL454573
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|166537343|gb|EG253046.1|EG253046
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCEST: gi|211162572|gb|FL132731.1|FL132731
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCAAACGCCCTGGGCGCATTCTTCGGACTCATCCAGCTGATCCTCTACEST: gi|28566554|gb|CB278202.1|CB278202
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCATCCAGCTGATCCTCTATEST: gi|148934526|gb|EC878568.2|EC878568
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|17932131|gb|BM269091.1|BM269091
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGATGGACGGCATACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|37361184|gb|CF602473.1|CF602473
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCATCCAGCTGATCCTCTATEST: gi|211148276|gb|FL467068.1|FL467068
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGYTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|93014839|gb|EB640359.1|EB640359
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTACEST: gi|24462465|gb|BM659996.1|BM659996
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCATCCAGCTGATCCTCTATEST: gi|211124352|gb|FL444992.1|FL444992
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
EST: GCTGCTGCTGGACGGCCTACGCGHTMATCCGCTTCGACCTCTACGTCACG ATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
genomic: GCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatca ... tgcaatgcagATCCCGAACGCCCTGGGCGCATTCTTCGGCCTCGTCCAGCTGATCCTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGTTGAGTACATGCCCTTCCTCCTGTCGCTGGTGAGCTTCCTCAACGGCTGCTGCTGGACGGCCTACGCGCTCATCCGCTTCGACCTCTACGTCACGgtcagtatcaccggcctctcatgttaacaaaagcgttacagaattaatataattccacctccaagttgagtatagtctcatctcagtttttaaaatacctgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA