1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATATCTATTGTTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcctttatttcactgtacatatgaacatgatatcctcccactatcccattttgtgcaatatggaaatatacaatgttgctttatttccatcatg...
species | Zea mays |
transcript | GRMZM2G123305_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTGEST: gi|31359716|gb|CD444073.1|CD444073
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAAATTATTTACTGTTGEST: gi|60400680|gb|DN233487.1|DN233487
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGTCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTGEST: gi|67041329|gb|CO467584.1|CO467584
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCCCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTGEST: gi|40334570|gb|CK368640.1|CK368640
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGTCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTGEST: gi|76293265|gb|DV032833.1|DV032833
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTGEST: gi|211040937|gb|FK998650.1|FK998650
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTAC-CATT TGGAGATCCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTEST: gi|44901341|gb|CK827886.1|CK827886
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTT
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGTCTGCCTTTACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGACGATGGTAAATTATTTACTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATCTATTGTTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcctttatttcactgtacatatgaacatgatatcctcccactatcccattttgtgcaatatggaaatatacaatgttgctttatttccatcatg
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccac