1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtgaattaattcatgcgctgtacttttttttatacttcttgaagagcatttctagctcactctatggtatctgttgcatcacag
species | Zea mays |
transcript | GRMZM2G078033_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGCGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|71434451|gb|DR815501.1|DR815501
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACAEST: gi|71437088|gb|DR818138.1|DR818138
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAEST: gi|149101926|gb|EE287458.2|EE287458
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCCTGAAGAG ACCGTGAAAGTGCGCGATGAGEST: gi|67021466|gb|CO450215.1|CO450215
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAG
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACTGGCAEST: gi|148932442|gb|EC876155.2|EC876155
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATEST: gi|31359211|gb|CD443568.1|CD443568
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGAT
EST: AGGAGACAGTCGATAAAGCTGGAGAAACATTCCAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACCACATGCCCCTGCTACAGGCAEST: gi|149011847|gb|EE042454.2|EE042454
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|211397302|gb|FL135062.1|FL135062
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|31364427|gb|CD448782.1|CD448782
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|148950453|gb|EC896022.2|EC896022
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATEST: gi|148981924|gb|EE027991.2|EE027991
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGAT
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAEST: gi|91055202|gb|EB165620.1|EB165620
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGEST: gi|148953295|gb|EE152782.2|EE152782
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATG
EST: GGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTTGA-GAG ACGGTGAAAGTGCGCGATGAGCAGEST: gi|67012438|gb|CO441187.1|CO441187
genomic: GGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTT-GAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAG
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|149011840|gb|EE042447.2|EE042447
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGGGAAAGTGCGCGATGAEST: gi|149047179|gb|EE048186.2|EE048186
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGA
EST: AGGAGACCGTCGATAAAGTTGGAGAAACATTCCAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACCCGACCTGCCEST: gi|211527782|gb|FL304403.1|FL304403
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCC
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGGCACTGCTACAGGCA
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtgaattaattcatgcgctgtacttttttttatacttcttgaagagcatttctagctcactctatggtatctgttgcatcacag
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA