1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTCAGTACTCAATGTATCTGATAACAAACTAAAGGAACTTCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtttctgcaattctaccatgatcccatttcagccccccactcctcttttgctttcatgtgcatgcactagagaatactgttatacgattaatc...
species | Zea mays |
transcript | GRMZM5G890241_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|14243691|gb|BG841341.2|BG841341
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|31909393|gb|CD650896.1|CD650896
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: CAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|16377233|gb|BI991834.1|BI991834
genomic: CAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|60351302|gb|DN218275.1|DN218275
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|60340411|gb|DN207384.1|DN207384
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: GCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGEST: gi|31909395|gb|CD650897.1|CD650897
genomic: GCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagG-AAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTG
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|211247057|gb|FL482035.1|FL482035
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGAEST: gi|10191716|gb|BE761792.1|BE761792
genomic: TCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
EST: GAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATG GAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
genomic: GAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtt ... aaatattcagGAAATGCTATTGAAGATGTGCCAGCGTCAATTTGCAACCTAGTTTGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTCAGTACTCAATGTATCTGATAACAAACTAAAGGAACTTCCAGAATCAATTGGAGGTTGCAGTTCCCTGGAAGAATTTCAAGCCAATGgtactcagtttctgcaattctaccatgatcccatttcagccccccactcctcttttgctttcatgtgcatgcactagagaatactgttatacgattaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac