Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcactcaacctatcatgttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca...

Basic information

species Zea mays
transcript GRMZM2G120674_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 4
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcac-------tcaacctatcatgttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca
| ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||| |       || |        | | | ||||  | ||  || ||||  || ||| |||  ||  |      || ||  |||| | | |||||   |     
TTTATGCAGATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtt-taatgctttcccctggttgta--gctc-acttgattacaatcatt-

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 4
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcac-------tcaacctatcatgttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca
         ||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||| |       || |        | | | ||||  | ||  || ||||  || ||| |||  ||  |      || ||  |||| | | |||||   |     
---------ATGGAAGTATCTGCTTGGATATCCTACAAAATCAATGGAGCCCTATATATGATGTTGCTGCGATATTGACCTCTATCCAGgtatcatttgaaccttcgcagagtgtcctaacaatcacatcga--tagcttcacttggtt-taatgctttcccctggttgta--gctc-acttgattacaatcatt-

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ23951 (Selaginella moellendorffii), 5'ss of exon 4
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcactcaacctatcatg-ttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca
| ||||| ||||||||||| ||| | |||||||| ||||| ||||||||||| || ||||||||||| |||||| |||| || || ||||| |   |     |||    |     |   ||  |  ||    ||| |||||||||    || || |                                  
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATTTATGATGTTGCCGCAATACTGACATCGATCCAGgtttgcttggaagtgttgagctgtgaacactgactccaagtttttctttttgttcttgttcttccag----------------------------------

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 4
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcactcaacctatcatg-ttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca
| ||||| ||||||||||| ||| | |||||||| ||||| ||||||||||| || ||||||||||| |||||| |||| || || ||||| |   |     |||    |  |  |   ||  |  ||    ||| ||| |||||     ||    || |                              
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATCTATGATGTTGCCGCAATACTGACATCGATCCAGgtttgcttgcaagtgttgagctgcgaacactgactccaagtttttcttttcgttct--tcttgttcttccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357087|gb|DN224060.1|DN224060
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|32837745|gb|CD977423.1|CD977423
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9254551|gb|BE345019.1|BE345019
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|6012426|gb|AW061863.1|AW061863
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|8516508|gb|BE123233.1|BE123233
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTTTTTAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211149048|gb|FL300334.1|FL300334
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|76289028|gb|DV028596.1|DV028596
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|149106021|gb|EE291669.2|EE291669
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211149042|gb|FL300328.1|FL300328
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCC-TGCTGTGTGACCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCC
EST: gi|20802675|gb|BQ293725.1|BQ293725
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211149040|gb|FL300326.1|FL300326
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCT
EST: gi|6827799|gb|AW331442.1|AW331442
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|148929954|gb|EE285763.2|EE285763
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTTTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60359324|gb|DN226297.1|DN226297
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211147600|gb|FL300320.1|FL300320
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGAC-TCTATTCAG                         TCCCTGCTGTGTGA
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGA
EST: gi|37378572|gb|CF625982.1|CF625982
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|71430726|gb|DR811776.1|DR811776
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9731376|gb|BE510128.1|BE510128
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|16926752|gb|BM079820.1|BM079820
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGAT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|40485810|gb|CK394750.1|CK394750
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|74233323|gb|DT641237.1|DT641237
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|6021288|gb|AW066216.1|AW066216
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9566167|gb|BE475676.1|BE475676
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60344768|gb|DN211741.1|DN211741
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|71430725|gb|DR811775.1|DR811775
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|5296137|gb|AI783012.1|AI783012
EST:     GTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: GTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9461686|gb|BE453854.1|BE453854
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60341249|gb|DN208222.1|DN208222
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|71435217|gb|DR816267.1|DR816267
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211268546|gb|FL032954.1|FL032954
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|6195042|gb|AW147146.1|AW147146
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60357084|gb|DN224057.1|DN224057
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9952861|gb|BE639444.1|BE639444
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9731385|gb|BE510137.1|BE510137
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAA
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAA
EST: gi|148932939|gb|EE285764.2|EE285764
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211268544|gb|FL032952.1|FL032952
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211409222|gb|FL440202.1|FL440202
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211268547|gb|FL032955.1|FL032955
EST:     CCAGTGGAGCCCTATATACT-ATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: CCAGTGGAGCCCTATATA-TGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|32865559|gb|CF005241.1|CF005241
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|76286530|gb|DV026098.1|DV026098
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60672663|gb|DN475359.1|DN475359
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAGATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60352412|gb|DN219385.1|DN219385
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9566172|gb|BE475681.1|BE475681
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|74233324|gb|DT641238.1|DT641238
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9952862|gb|BE639445.1|BE639445
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|71756699|gb|DR954636.1|DR954636
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211534683|gb|FL445701.1|FL445701
EST:     ATCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|9461700|gb|BE453861.1|BE453861
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60359587|gb|DN226560.1|DN226560
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60346843|gb|DN213816.1|DN213816
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|113702935|gb|EE680439.1|EE680439
EST:     ACCAGTGGAGCCCTATATATTATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCC
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211357324|gb|FL465449.1|FL465449
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCTTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|32848503|gb|CD988184.1|CD988184
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|211266116|gb|FL032945.1|FL032945
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|6952329|gb|AW424397.1|AW424397
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|149089468|gb|EE178713.2|EE178713
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
EST: gi|60342255|gb|DN209228.1|DN209228
EST:     ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG                         TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT
genomic: ACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 348

TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCTAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 418

TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCTAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 492

TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCTAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 489

TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactca ... tcctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCTAACTCTGAAGCAGCTAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAGgtatcactcattttgtcactcaacctatcatgttgaaataacttcgttttgttctaacactgcctgtctattatactgctctaatggattattgtatcca

- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - -  GTGGAG