1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAGCCTCGGCTCCTCGGCCACCCAGCTCTCCATCTCCATCCCCATGGCGCCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgtcgatccgtaggcacacttgttttttttttcttcttttcttcaggtttgagcctttcgttctgcgaaccttcttctaaattcccgcacggccttgcag
species | Zea mays |
transcript | GRMZM2G041223_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTTEST: gi|12046498|gb|BF728637.1|BF728637
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAAC-TGAGTAACCATGCGGACCCCAACGTCTCEST: gi|211469460|gb|FK962975.1|FK962975
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTC
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTTEST: gi|211469462|gb|FK962977.1|FK962977
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAAACCATGCGGACCCCAACGTCTCAGAGCTEST: gi|60357993|gb|DN224966.1|DN224966
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAA-CCATGCGGACCCCAACATCTCAGAGCT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTTEST: gi|211173973|gb|FL462213.1|FL462213
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAAACCATGCGGACCCCAACGTCTCAGAGCTGACGACTCTEST: gi|211142471|gb|FL453923.1|FL453923
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGT-AACCATGCGGACCCCAACATCTCAGAGCTGACGACTCT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAAACCATGCGGACCCCAACGTCTCAGAGCTGACGACTCTEST: gi|211469463|gb|FK962978.1|FK962978
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGT-AACCATGCGGACCCCAACATCTCAGAGCTGACGACTCT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTTEST: gi|6973656|gb|AW438392.1|AW438392
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTT
EST: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAG ATGAAC-TGAGTAACCATGCGGACCCCAACGTCTCAGAGCTGACGACTCTT
genomic: CCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgt ... ggccttgcagATGAACCTGAGTAACCATGCGGACCCCAACATCTCAGAGCTGACGACTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGCCTCGGCTCCTCGGCCACCCAGCTCTCCATCTCCATCCCCATGGCGCCCTCCGACTTCAACACCAGCTCCAGATCGCCGAATGGAATACCGTCAAGgtaaagccgtcgatccgtaggcacacttgttttttttttcttcttttcttcaggtttgagcctttcgttctgcgaaccttcttctaaattcccgcacggccttgcag
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