1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAGgttggtccttagtttgttacaatatgtttgaggatcttgttacgttatgtaatatgatttgctgcacttag
species | Zea mays |
transcript | GRMZM5G898735_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAG GATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGATEST: gi|78083214|gb|DV511607.1|DV511607
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAGgttggtcctt ... ctgcacttagGATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGAT
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAG GATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGATEST: gi|30087447|gb|CB885653.1|CB885653
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAGgttggtcctt ... ctgcacttagGATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGAT
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAG GATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGAT
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAGgttggtcctt ... ctgcacttagGATGTATCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATCGGAATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAACCAACCATTAGAGAGCTACAGgttggtccttagtttgttacaatatgtttgaggatcttgttacgttatgtaatatgatttgctgcacttag
- - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT