1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCCAACAGCATTCTCGTCGTCACCATCAACGGCATCGGCCTCGTCATCGAGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcgtgccatgttgttcgcccgatccatgatctgtccctgctgttgtttccctccacgtgtagtgtatctctcatctggtggtggtttttgagcttaatgcag
species | Zea mays |
transcript | GRMZM2G157675_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGCTCGCCGTGEST: gi|31628388|gb|CD526584.1|CD526584
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGGCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCANAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|28188031|gb|CB179641.1|CB179641
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211342073|gb|FL201410.1|FL201410
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGST-TCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|31627932|gb|CD526360.1|CD526360
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|28188247|gb|CB179857.1|CB179857
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211344467|gb|FL201424.1|FL201424
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCEST: gi|211342078|gb|FL201415.1|FL201415
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCC
EST: AGGC--TCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211342077|gb|FL201414.1|FL201414
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: GGCS-TGCTACCTCACTATCTTCTTCCTCTATTCCGRCAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTEST: gi|37361336|gb|CF602625.1|CF602625
genomic: GGCCGT-CTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCT
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211344465|gb|FL201422.1|FL201422
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: GGCT-TCTTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGCTCGCCGTGEST: gi|211162572|gb|FL132731.1|FL132731
genomic: GGCCGTCT-ACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: TATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGCTCGCCGTGEST: gi|211342079|gb|FL201416.1|FL201416
genomic: TATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGGCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|148934526|gb|EC878568.2|EC878568
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|31628107|gb|CD526445.1|CD526445
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|14245092|gb|BG873674.1|BG873674
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211344464|gb|FL201421.1|FL201421
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTEST: gi|211342075|gb|FL201412.1|FL201412
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGT
EST: AGGCS-TCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTEST: gi|71317142|gb|DR795259.1|DR795259
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCC-TGGCCGTGGAGATTCTGTTCATGGTCGCCGT
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|211344466|gb|FL201423.1|FL201423
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGC-GTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|28187755|gb|CB179365.1|CB179365
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTTCGCGATCCTGGCCGTGGAGATTCTTGTTCATGGTCGCCGEST: gi|7138105|gb|AW499432.1|AW499432
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTT-CGCGATCCTGGCCGTGGAGATTCT-GTTCATGGTCGCCG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGGTCATGCTCGCCGTGEST: gi|28188001|gb|CB179611.1|CB179611
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGTGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|24462465|gb|BM659996.1|BM659996
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTGEST: gi|28187611|gb|CB179221.1|CB179221
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
EST: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGC AAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
genomic: AGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcg ... cttaatgcagAAGAAGGCGTTCGCGATCCTGGCCGTGGAGATTCTGTTCATGGTCGCCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCAACAGCATTCTCGTCGTCACCATCAACGGCATCGGCCTCGTCATCGAGGCCGTCTACCTCACTATCTTCTTCCTCTATTCCGACAGCCAGAAGCGCgtgagtgtcgtgccatgttgttcgcccgatccatgatctgtccctgctgttgtttccctccacgtgtagtgtatctctcatctggtggtggtttttgagcttaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC