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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag

Basic information

species Zea mays
transcript GRMZM2G130034_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 5'ss of exon 3
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
||||||||| || ||||||||||| ||||||||     |||| ||||| |||||||| ||||| ||||| ||||||||||||||| |||  ||    ||||  |       ||  || || | | ||| ||||  ||| |   |   ||      | || |   |||  |||      |                                                                       
GTATATAAAGGGAATAATGAATCAGCTTGGCCTGTCCATTCGTGAAGACGCTGTTGGCAACATTTTTGGGCGCTGgtgagttggtattggatggttctggaacc---atgtttatttgatgtatctggttttac-aagtagttatctatggcaaagcaattctagcaaatgggatggca-----------------------------------------------------------------------

upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G34790.1 (Glycine max), 5'ss of exon 3
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt-cttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
|||| |||||      ||| | |    ||| ||   |||  |||| ||||||||||||||||||||||| || ||||||||   | ||||  |      | |    ||   |       || || |   ||            |||   || |  |   ||||||   |||| ||                                                                            
GTATGTAAAAACCCAGATGGAACTTGCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagtgtctgcttgttttgttccgcaaaaactttccaaatgaaatctcatccaataacttctaacctcaatatttatatttataattgtctctctgtct----------------------------------------------------------------------------

upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G32850.1 (Glycine max), 5'ss of exon 3
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctg-gctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
|||| |||||      ||| | |    ||||||   |||  |||| ||||||||||||||||||||||| || ||||||||       | ||||       |  | || || | |   |    ||   | | |   | ||| |||  | ||     |||  |    || |    | | || | |||   | |                                                           
GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagt-------gtctgct------tgttttgttcctcg--aaagaattccaaatgaaatatcatccaataacttc----taacctcaatatttatatttataattgtctctgtctct---------------------------------------------------------

upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G32850.2 (Glycine max), 5'ss of exon 2
-------------------------GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctg-gctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
                         |||| |||||      ||| | |    ||||||   |||  |||| ||||||||||||||||||||||| || ||||||||       | ||||       |  | || || | |   |    ||   | | |   | ||| |||  | ||     |||  |    || |    | | || | |||   | |                                                           
CTCCTTCCTTGTCTTGCGTCTGTAGGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagt-------gtctgct------tgttttgttcctcg--aaagaattccaaatgaaatatcatccaataacttc----taacctcaatatttatatttataattgtctctgtctct---------------------------------------------------------

upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G43600.1 (Arabidopsis thaliana), 5'ss of exon 3
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
|||| | ||     | |||   |    ||| |||  |||| |||||||||||||||||||||||||||||   ||||   |||||  |  ||           ||||| |    | | |||  || |   ||| ||||     |  | |||   | |   || | ||| ||   |     | | |||| ||   ||| || |                                                
GTATGTGAAGAATTTGATGGCACTTGCTGGTCTTACTGTTAGAGAAGATGCTGTTGGTAACATATTTGGCAAATGgt---ttggttctcgct-----------ctctgtt----gctaattgtttcg---ttaagaag-----ataggtttgattat--gttatccatgtgag-gtgtgttgttttgacttctctaacttag------------------------------------------------

upper sequence: GRMZM2G130034_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 3
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag
 || || |||    | |||  ||    ||| ||   | ||||||| ||||||||||||||||||||||| || |||| |||   | |    ||   |||  ||||  ||  ||   |     |  ||   |         |  |  || | | |  | | |  || | | | |                                                                             
ATACATTAAAAACTTGATGGGTCTCTCTGGTCTCTCTATTCGAGAGGATGCTGTTGGTAACATATTTGGTCGATGgtaagtcattttatcttgaaattgtgttcttagcgatttaatggaggccatgccctagatggagctgaacagagtatacaatga-tcatgtagcagacctg--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211310352|gb|FL001435.1|FL001435
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|71305489|gb|DR788882.1|DR788882
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|148941174|gb|EC886056.2|EC886056
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|30031746|gb|CB833597.1|CB833597
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|71775247|gb|DR973125.1|DR973125
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|71434107|gb|DR815157.1|DR815157
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCAAGCCTGGACTAGGAGCAGT
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGT
EST: gi|78086441|gb|DV514834.1|DV514834
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|148969605|gb|EE020450.2|EE020450
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211312372|gb|FL001443.1|FL001443
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|213178277|gb|FM185022.1|FM185022
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211310349|gb|FL001432.1|FL001432
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGAMTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|76015424|gb|DT942594.1|DT942594
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|32919442|gb|CF024254.1|CF024254
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTCGCAACTGGGTCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|50323473|gb|CO518599.1|CO518599
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|91873539|gb|EB403496.1|EB403496
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211312369|gb|FL001440.1|FL001440
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|86473059|gb|DY239429.1|DY239429
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAAGAGCAGTTGCAACTGGATCTCGTGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|50324880|gb|CO520006.1|CO520006
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|91874398|gb|EB404355.1|EB404355
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|31361617|gb|CD445974.1|CD445974
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211312371|gb|FL001442.1|FL001442
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAG
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAG
EST: gi|148983478|gb|EE029496.2|EE029496
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|71441173|gb|DR822223.1|DR822223
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211312376|gb|FL001447.1|FL001447
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGC-GCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGC
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGC
EST: gi|211312373|gb|FL001444.1|FL001444
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|149103753|gb|EE289159.2|EE289159
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|71427278|gb|DR808328.1|DR808328
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|31356201|gb|CD440558.1|CD440558
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|148940595|gb|EC885401.2|EC885401
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|211310353|gb|FL001436.1|FL001436
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|78107618|gb|DV526036.1|DV526036
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
EST: gi|149110741|gb|EE190584.2|EE190584
EST:     CTTGGTCTTGTTGTTCGAAAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCCACTGGATCT
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCT
EST: gi|211312380|gb|FL001451.1|FL001451
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCA
EST: gi|148944452|gb|EC889567.2|EC889567
EST:     CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTG                         GGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA
genomic: CTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggt ... ccttctacagGGAGGGTTCCGAGCCTGGACTAGGAGCAGTTGCAACTGGATCTCATGTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATATAAAAGGGATAATGAATCAACTTGGCCTTGTTGTTCGAGAAGATGCTGTTGGTAACATATTTGGCCGCTGgtgagttggtcttgactgcccttggattctctgctcttggttcatttctttggatttaggaagcatacaaggattttgctgtaaattgtgcatctggctgaaaagtctcttgattttgttaaatttgctgtgtgctggaattctcatgcccattgaacattgcaaccttctacag

- - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT