Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctctttagatgttaaggaactaaattatcctcatgtattgacacctgaatagatttacaataagtggtttaataccatttttttcag

Basic information

species Zea mays
transcript GRMZM2G120674_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g57790.2 (Oryza sativa), 5'ss of exon 3
GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctct---ttagatgttaaggaactaaattatcctcatgtattgacac------ctgaatagattta-caat--aagtggtttaataccatttttttcag---------------------
|||||||||||||||| || |||| |||||||||||| ||||||||||| |||  |||||||||||| || ||||||||||| ||||| |||||||    |   ||     ||     |||  |||||| |       |   ||      |  || ||||| |   ||  |||   |  |  || | || |||  |                     
GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctcataacttgataatttgaccacttcattatctttgcaagctactacattattcccaagagattgaattattgaagatatacacaactaattgtttttgttatccgttcagtttatgcag

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 3
GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctct---ttagatgttaaggaactaaattatcctcatgtattgacac------ctgaatagattta--caat-aagtggtttaataccatttttttcag------------
|||||||||||||||| || |||| |||||||||||| ||||||||||| |||  |||||||||||| || ||||||||||| ||||| |||||||    |   ||     ||     |||  |||||| |       |   ||      |  || ||||| |   | | |||   |  |  || | || |||  |            
GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATAgtatgtctcataacttgataatttgaccacttcattatctttgcaagctactacattattcccaagagattgaattattgaagatatacacaactaattgtttttgttatccgttcag

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 3
GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctctttagatgttaaggaactaaattatcctcatgtattgacacctgaatagatttacaataagtggtttaataccatttttttcag
| ||||||||||| ||  | || |  || || || || ||||||||||| |||| ||| |||||||| |||| |||||| ||||| ||||||| ||||  ||   ||    ||   ||  ||  |||| | |   |  | |                                           
GTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCCAAATGTCCGGTTTGTGTCGAAGATGTTCCATCCCAACAgtaagttcgttt---attcgtagtgtct--atcttccttacgcgctctcgcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357087|gb|DN224060.1|DN224060
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|32837745|gb|CD977423.1|CD977423
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9254551|gb|BE345019.1|BE345019
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|6012426|gb|AW061863.1|AW061863
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|8516508|gb|BE123233.1|BE123233
EST:     ACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: ACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211149048|gb|FL300334.1|FL300334
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|149106021|gb|EE291669.2|EE291669
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211149042|gb|FL300328.1|FL300328
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|20802675|gb|BQ293725.1|BQ293725
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211149040|gb|FL300326.1|FL300326
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211149047|gb|FL300333.1|FL300333
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|6827799|gb|AW331442.1|AW331442
EST:     CTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|148929954|gb|EE285763.2|EE285763
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60359324|gb|DN226297.1|DN226297
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211147600|gb|FL300320.1|FL300320
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|37378572|gb|CF625982.1|CF625982
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|71430726|gb|DR811776.1|DR811776
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9731376|gb|BE510128.1|BE510128
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|16926752|gb|BM079820.1|BM079820
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTCGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|40485810|gb|CK394750.1|CK394750
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|74233323|gb|DT641237.1|DT641237
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|71315558|gb|DR794383.1|DR794383
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGNAGCATCTGTTTGGACATCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCC
EST: gi|6021288|gb|AW066216.1|AW066216
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9566167|gb|BE475676.1|BE475676
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60344768|gb|DN211741.1|DN211741
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|71430725|gb|DR811775.1|DR811775
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|149106022|gb|EE291670.2|EE291670
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCACACC                         TCTATGCGGATGGAACCATCTGTTTGGACATCCTACAAAAC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAAC
EST: gi|9461686|gb|BE453854.1|BE453854
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60341249|gb|DN208222.1|DN208222
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|71435217|gb|DR816267.1|DR816267
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|6195042|gb|AW147146.1|AW147146
EST:     TGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: TGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60357084|gb|DN224057.1|DN224057
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9952861|gb|BE639444.1|BE639444
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9731385|gb|BE510137.1|BE510137
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|148932939|gb|EE285764.2|EE285764
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211268544|gb|FL032952.1|FL032952
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211409222|gb|FL440202.1|FL440202
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|32865559|gb|CF005241.1|CF005241
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|76286530|gb|DV026098.1|DV026098
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60672663|gb|DN475359.1|DN475359
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60352412|gb|DN219385.1|DN219385
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9566172|gb|BE475681.1|BE475681
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|74233324|gb|DT641238.1|DT641238
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9952862|gb|BE639445.1|BE639445
EST:     TTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: TTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|71756699|gb|DR954636.1|DR954636
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211534683|gb|FL445701.1|FL445701
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAATCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|9461700|gb|BE453861.1|BE453861
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60359587|gb|DN226560.1|DN226560
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60346843|gb|DN213816.1|DN213816
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|113702935|gb|EE680439.1|EE680439
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211357324|gb|FL465449.1|FL465449
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|32848503|gb|CD988184.1|CD988184
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|211266116|gb|FL032945.1|FL032945
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|6952329|gb|AW424397.1|AW424397
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|149089468|gb|EE178713.2|EE178713
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
EST: gi|60342255|gb|DN209228.1|DN209228
EST:     CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA                         TCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC
genomic: CAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 143

GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 146

GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 196

GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 181

GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctc ... tttttttcagTCTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGCCCTATATATGATGTTGCGGCAATATTGACCTCTATTCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACAgtatgttctctttagatgttaaggaactaaattatcctcatgtattgacacctgaatagatttacaataagtggtttaataccatttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG