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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGGGGACTCGAGGGGTTTTGCGTTCGTGCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggttttttttttcgactgtgctccacatgtggggattttggagcttctatttttgataattgtagattttttgggtgcag

Basic information

species Zea mays
transcript GRMZM2G110143_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110143_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g37960.2 (Oryza sativa), 5'ss of exon 3
GACCGGGGACTCGAGGGGTTTTGCGTTCGTGCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtg------gttttttttttcgactgtgctccacatgtggggattttg----gagcttct-atttttga---taattgtagattttttgg---gtgcag
||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||       ||||||| ||    ||    |    |||  || ||| |    ||  |||| ||  ||||   | || ||   ||||||     ||||||
GACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGAGGCGCAGAAGGCTATAGATCGGCTTGATGgtgcgtaacctttttttctttttttgattcctttgtgtttgggtttcgttctgaatttctgatgattgagtctgatggtgttttttttacgctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4152004|gb|AI372138.1|AI372138
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGACG                         GCCGTAATGTGGATGGAAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|74237054|gb|DT644968.1|DT644968
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|149005364|gb|EE039916.2|EE039916
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211526332|gb|FL357659.1|FL357659
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|89757947|gb|DY687314.1|DY687314
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|149107293|gb|EE189175.2|EE189175
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|50328977|gb|CO524103.1|CO524103
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211277772|gb|FL330870.1|FL330870
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCANTGGTGCATGTTTGCAAAGTACGG
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCA-TGGTGCA-GTTTGCAAAGTACGG
EST: gi|211470092|gb|FL331953.1|FL331953
EST:     GCGGTACAAGTACGCCGACGAGSS-CAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATNGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|71420359|gb|DR805069.1|DR805069
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|71325769|gb|DR799565.1|DR799565
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211008119|gb|FL365557.1|FL365557
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGC
EST: gi|88752174|gb|DY536315.1|DY536315
EST:     GCGGTACAAGTACGCCGACGAGGGGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGA-CATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|71321797|gb|DR797591.1|DR797591
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|149101748|gb|EE287365.2|EE287365
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211347504|gb|FL349161.1|FL349161
EST:     GCGGTACAAGTACGCCGACRAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211440857|gb|FL253846.1|FL253846
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACG
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACG
EST: gi|211420441|gb|FL363214.1|FL363214
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211253499|gb|FL469937.1|FL469937
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|89756357|gb|DY686407.1|DY686407
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211235451|gb|FL353173.1|FL353173
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTT
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTT
EST: gi|60400418|gb|DN233225.1|DN233225
EST:     ATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: ATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|211208282|gb|FL335694.1|FL335694
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|31558121|gb|CD527333.1|CD527333
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGCAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|50335677|gb|CO530803.1|CO530803
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|74241218|gb|DT649132.1|DT649132
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|30307256|gb|CD001929.1|CD001929
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|74243434|gb|DT651348.1|DT651348
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|78105340|gb|DV523758.1|DV523758
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGA
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGA
EST: gi|78076983|gb|DV505417.1|DV505417
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|50328942|gb|CO524068.1|CO524068
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|76290040|gb|DV029608.1|DV029608
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
EST: gi|50325433|gb|CO520559.1|CO520559
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAAGTACGGCC