1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattgtgttagaatatagatgagtgctcaagttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccag
species | Zea mays |
transcript | GRMZM2G073427_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATEST: gi|211441181|gb|FL267164.1|FL267164
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG GTTTCCAGGTTAACGTCTGAAGA-TGCATCTTTTGCTGAAGCGACTGGCTGEST: gi|211441179|gb|FL267162.1|FL267162
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGA-GAATGCATCTTT-GCTGAAGCGACTGGCTG
EST: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATEST: gi|211441180|gb|FL267163.1|FL267163
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG GTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattgtgttagaatatagatgagtgctcaagttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccag
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - AGCAAG