1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgcttggaatgttgctgctactgtgctattgtcgtgtggtcatttaggactaacaataatggtctgggcagtccaaattgtcttatcggagtttg...
species | Zea mays |
transcript | GRMZM2G069008_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211274431|gb|FL232523.1|FL232523
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|149096586|gb|EE182344.2|EE182344
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211274434|gb|FL232526.1|FL232526
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTEST: gi|211274435|gb|FL232527.1|FL232527
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGEST: gi|211274436|gb|FL232528.1|FL232528
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGG
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAKGGCCCGCGGTTGCTGTGTTGATTCEST: gi|149074765|gb|EE163195.2|EE163195
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTC
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211274445|gb|FL232537.1|FL232537
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCCTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCTGCGGTTGCTGEST: gi|211274441|gb|FL232533.1|FL232533
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTG
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGEST: gi|78087424|gb|DV515817.1|DV515817
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCG
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211276250|gb|FL232539.1|FL232539
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|6021120|gb|AW066048.1|AW066048
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|148942502|gb|EC887517.2|EC887517
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|91054277|gb|EB164695.1|EB164695
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: AACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211274437|gb|FL232529.1|FL232529
genomic: AACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|67016855|gb|CO445604.1|CO445604
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|148991430|gb|EE032932.2|EE032932
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|211274440|gb|FL232532.1|FL232532
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|148942503|gb|EC887518.2|EC887518
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|149096585|gb|EE182343.2|EE182343
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|149111714|gb|EE190861.2|EE190861
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|67042992|gb|CO469247.1|CO469247
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|78082237|gb|DV510649.1|DV510649
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|15313833|gb|BI478977.1|BI478977
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|29543762|gb|CB604142.1|CB604142
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTEST: gi|31355362|gb|CD439719.1|CD439719
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
EST: TCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAG GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
genomic: GCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgctt ... gtatatttagGTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGTTGACATGTTCGGGAAACGGGTGGGCTTTCTCAAGTTCAAGGCTGATATCGTGGACGAGGAAACCAAAACCAAGgtgattgcttggaatgttgctgctactgtgctattgtcgtgtggtcatttaggactaacaataatggtctgggcagtccaaattgtcttatcggagtttg
- - - - - - - - - - - - - - - - - - - - - - GCTGAT