Sequence
atgc intronic sequence ATGC exonic sequenceCTCGAGAACTATTTCATATTCAATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctggatctctaccccttactctgacgacgccattttctgatttccttcgttacttcatcctcctctctctctctctctctctctctctctctctctctccagtcagcaagcagttcttgtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G053909_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g51400.3 (Oryza sativa), 5'ss of exon 2
CTCGAGAACTATTTCATATTCAATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctggatctctaccccttactctgacgacgccattttctgatttccttcgttacttcatcctcctctctctctctctctctctctctctctctctctctccagtcagcaagcagttcttgtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaag
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CTTGAGAACTACTTCATATTCAATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatg-ctagttatgtttccct------gagga-------ttctgctactacctgtcattt--------------tttcttgacatctctctctcacgcacatttcattctgca-gcatctttcatctttcatgacttgttttcacttctcagttcatttgtgatgctctgcactgtag
upper sequence: GRMZM2G053909_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g51400.5 (Oryza sativa), 5'ss of exon 2
----------------------------CTCGAGAACTATTTCATATTCAATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctggatctctaccccttactctgacgacgccattttctgatttccttcgttacttcatcctcctctctctctctctctctctctctctctctctctctccagtcagcaagcagttcttgtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaag
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GCTCACATAGTTATATTCTGTCTCGCAGCTTGAGAACTACTTCATATTCAATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatg-ctagttatgtttccct------gagga-------ttctgctactacctgtcattt--------------tttcttgacatctctctctcacgcacatttcattctgca-gcatctttcatctttcatgacttgttttcacttctcagttcatttgtgatgctctgcactgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38568931|gb|CF974816.1|CF974816EST: ATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAA GAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCA
genomic: ATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctgg ... tgctttaaagGAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGAGAACTATTTCATATTCAATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctggatctctaccccttactctgacgacgccattttctgatttccttcgttacttcatcctcctctctctctctctctctctctctctctctctctctccagtcagcaagcagttcttgtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaag
- - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - GATGGA