1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGCGGTGGCACGTTCGGCCTGGGGCCCACCTCTCAGCTGCACATGGACAGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttcattatgttttctctgcaacctctgtcacgtatcccactgtttagtcctagcacatggcgtagttagctccctgatcggtgtcagatgggtc...
species | Zea mays |
transcript | GRMZM2G041223_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTEST: gi|12046498|gb|BF728637.1|BF728637
genomic: TGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
EST: TGCCGCTGCTTACGCGACTGCGTGCGTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTEST: gi|6973656|gb|AW438392.1|AW438392
genomic: TGCCGCTGCTTACGCGACTGC-TGC-TGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
EST: AGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
genomic: AGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCGGTGGCACGTTCGGCCTGGGGCCCACCTCTCAGCTGCACATGGACAGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttcattatgttttctctgcaacctctgtcacgtatcccactgtttagtcctagcacatggcgtagttagctccctgatcggtgtcagatgggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctccctg