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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaattttatttagcaacatataatatgttttgtaacttcatttaatataataggctttatttgattcattactatagctttttagcttttgtt...

Basic information

species Zea mays
transcript GRMZM2G553379_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020972|gb|FL097346.1|FL097346
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGGCAATTGGTGCCACG
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGG-CAATTGGTGCCACG
EST: gi|76011626|gb|DT938796.1|DT938796
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|78089928|gb|DV518302.1|DV518302
EST:     GCAGAATCTGAAACTCAG                         GGCAAATGGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAAT
genomic: GCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGC-AATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAAT
EST: gi|50325812|gb|CO520938.1|CO520938
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76020109|gb|DT947279.1|DT947279
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAACACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76909292|gb|DV163313.1|DV163313
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAAACTAAAG-CGAAAGTCGAGACAAT
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAA-CTAAAGGCGAAGGTCGAGACAAT
EST: gi|50324244|gb|CO519370.1|CO519370
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|87157251|gb|DY402040.1|DY402040
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71440937|gb|DR821987.1|DR821987
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCA-TTGGTGCCACGAGTATAGAAAACT
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACT
EST: gi|76932876|gb|DV173214.1|DV173214
EST:     GCTACTCCTATGCAGAANAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71306906|gb|DR789609.1|DR789609
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|78089929|gb|DV518303.1|DV518303
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA