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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag

Basic information

species Zea mays
transcript GRMZM2G363460_T06
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971702|gb|EE022431.2|EE022431
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211174721|gb|FL404361.1|FL404361
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148934906|gb|EC878952.2|EC878952
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148946560|gb|EC885619.2|EC885619
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|33468109|gb|CF245158.1|CF245158
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|149085990|gb|EE175517.2|EE175517
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148947997|gb|EC893497.2|EC893497
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148941345|gb|EC886254.2|EC886254
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148980471|gb|EE027160.2|EE027160
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|78109256|gb|DV527672.1|DV527672
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211092253|gb|FL379378.1|FL379378
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|76913179|gb|DV165031.1|DV165031
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC