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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgccaatttccctcttgggttcgagttcgagggggtttgattctgatgtcagtggtttgcggcgtggctgcttgtgcag

Basic information

species Zea mays
transcript GRMZM2G147500_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31611780|gb|CD568402.1|CD568402
EST:     CGGGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: CGGGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122097|gb|FL004251.1|FL004251
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122868|gb|FL004257.1|FL004257
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122100|gb|FL004254.1|FL004254
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124438|gb|FL004293.1|FL004293
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124442|gb|FL004297.1|FL004297
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|22715261|gb|BU197668.1|BU197668
EST:     GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124431|gb|FL004286.1|FL004286
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122872|gb|FL004261.1|FL004261
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122877|gb|FL004266.1|FL004266
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211123651|gb|FL004271.1|FL004271
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCNAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124436|gb|FL004291.1|FL004291
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211123653|gb|FL004273.1|FL004273
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122095|gb|FL004249.1|FL004249
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122881|gb|FL004270.1|FL004270
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124441|gb|FL004296.1|FL004296
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124440|gb|FL004295.1|FL004295
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|26559425|gb|CA831660.1|CA831660
EST:     GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122880|gb|FL004269.1|FL004269
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122101|gb|FL004255.1|FL004255
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211123664|gb|FL004284.1|FL004284
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211125213|gb|FL004301.1|FL004301
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211122098|gb|FL004252.1|FL004252
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124432|gb|FL004287.1|FL004287
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211124434|gb|FL004289.1|FL004289
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211123652|gb|FL004272.1|FL004272
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|148964224|gb|EE015404.2|EE015404
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|22133783|gb|BQ833900.1|BQ833900
EST:     GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|26558350|gb|CA830585.1|CA830585
EST:     GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: gi|211123661|gb|FL004281.1|FL004281
EST:     GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG                         CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG