Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaatatttctttcccttcgcctctcttcagactccaactagaccttcaattcatggattccgtcacag

Basic information

species Zea mays
transcript GRMZM2G147500_T04
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37397418|gb|CF636006.1|CF636006
EST:     GGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|60342233|gb|DN209206.1|DN209206
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|32943705|gb|CF048524.1|CF048524
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|71427991|gb|DR809041.1|DR809041
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|211407819|gb|FL480459.1|FL480459
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|211359663|gb|FL110322.1|FL110322
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCCGAG-
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCC-GAGG
EST: gi|60350197|gb|DN217170.1|DN217170
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         -G--AGG---CATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|149096859|gb|EE182653.2|EE182653
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTTTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|76923166|gb|DV169365.1|DV169365
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|31405728|gb|CD484460.1|CD484460
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGACATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
EST: gi|32911044|gb|CF015856.1|CF015856
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         TGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... tccgtcacagTGGCAGGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGT