1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACAGCCGTCCCATGCCAACAAAGCAACGGATGCCCCAGCGGCAAGCAGCGATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaataggctacgaacacttcagctcgcgtccttttatggcgacgcgagtggaactaatagccgttgtccatgcag
species | Zea mays |
transcript | GRMZM2G702026_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|33092228|gb|CF052222.1|CF052222
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|211162598|gb|FL365710.1|FL365710
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|32838526|gb|CD978204.1|CD978204
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|19770079|gb|BQ034800.1|BQ034800
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|26457668|gb|CA829251.1|CA829251
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTAEST: gi|22543313|gb|BU093751.1|BU093751
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
EST: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAG GTAATCATGCAAGGGGTGGCGGTTGGCAGGGCGGTGGACTTGACGAGGCTA
genomic: ATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaatag ... gtccatgcagGTAATCATGCAAGGGGTGGCGGTTGGCCGGGCGGTGGACTTGACGAGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGCCGTCCCATGCCAACAAAGCAACGGATGCCCCAGCGGCAAGCAGCGATCGCTCTCCTAACGAGACAGAGAGCCGGCAAGCCAGGAGCTGCACCAAGgtgacaataggctacgaacacttcagctcgcgtccttttatggcgacgcgagtggaactaatagccgttgtccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC