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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAGgttcgtgctccattttattttcgatcactcaaaataatagcatgcatgcctaggtgttaaatagaaatacatcctagaaatattatgttcctttaggtga...

Basic information

species Zea mays
transcript GRMZM2G130034_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130034_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 5'ss of exon 11
AGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAGgttcgtgctccattttattttcgatcactcaaaataatagcatgcatgcctaggtgtta-aatagaaatacatcctagaaatattatgttcctttaggtga
| |||||||||||||||||||||||||||| ||||||||||||  || | |||  | ||      |    | |   || | ||   |     || || || |||      | ||  |  || |   |    |  ||     |
AATATCACCAATGGGTATGATCTTCATTCCATGTTACAAAGgtctgtacaccacgtcatcacttcttgtcctactaaagatcaattac-ttgagatgctagaatgtttcaagatattctaatttccaccaccaattgaaaaa

upper sequence: GRMZM2G130034_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 11
AGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAGgttcgtgctccattttattttcgat-cactcaaaataatagcatgcatgcctaggtgttaaatagaaatacatcctagaaatattatgttcctttaggtga-
| |||| |||||||||||||| |||||||| ||||||||||||  | |||    | | | || | | ||    ||||  |  |||  |  | |   |   |  |  ||||        |||  || ||     | |   ||  
AATATCTCCAATGGGTATGATATTCATTCCATGTTACAAAGgtatgagctatcatctctctttgctacaactgaaattctttcat--aaccttttataccatgtttaaattatggaatgaagcatgattggtttctgattgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936612|gb|EC880735.2|EC880735
EST:     TCCCTGTTACAAAG                         GTTACAGCCACAACCCGGAGGAGTATGCATCACCCGAGGACATGGCGAATG
genomic: TCCCTGTTACAAAGgttcgtgctc ... tccctttcagGTTACAGCCACAAGCCGGAGGAGTATGCATCACCCGAGGACATGGCGAATG
EST: gi|76288907|gb|DV028475.1|DV028475
EST:     TTCATTCCCTGTTACAAAG                         GTTACAGCCACAAGCCGGAGGAGTATGCATCACCCGAGGACATGGCGAATG
genomic: TTCATTCCCTGTTACAAAGgttcgtgctc ... tccctttcagGTTACAGCCACAAGCCGGAGGAGTATGCATCACCCGAGGACATGGCGAATG
EST: gi|76288906|gb|DV028474.1|DV028474
EST:     TTCATTCCCTGTTACAAAG                         GTTACAGCCCCAAGCCGGAGGAGTATGCATCCCCCGAGGACATGGCGAATG
genomic: TTCATTCCCTGTTACAAAGgttcgtgctc ... tccctttcagGTTACAGCCACAAGCCGGAGGAGTATGCATCACCCGAGGACATGGCGAATG