Sequence
atgc intronic sequence ATGC exonic sequenceATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgtttactttttgtggttgatccagtctaatttgaataatattctaagaactgtgtattactgtctttctcccatgatacttttcatcaacttgtggcctgtcgattctttcccatcatatttgttgctcaagatggtgcttgttgcatttcatttccaaatctatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030235_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g06980.1 (Oryza sativa), 5'ss of exon 12
ATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgtttactttttgtggttgatccagtctaatttgaataatattctaagaactgtgtattactgtctttctcccatgatacttttcatcaacttgtggcctgtcgattctttcccatcatatttgttgctcaagatggtgcttgttgcatttcatttccaaatctatttag
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ATCACTAAATGCTGCTGCTGGACGCCTCAAGAAAACCAGGGAAGAGAGGGACCAATTTGATGAAGCAAACAATCAAATTATATTTAAATTAAAAACAAAGgtgcttttcccatcatacttctgaagaacttgtttattcccatatgtttgttactcaaaatgacttgtttttctttccatatca-acttag--------------------------------------------------------------------------------------
upper sequence: GRMZM2G030235_T05 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G43840.1 (Glycine max), 5'ss of exon 12
ATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgtttactttttgtggttgatccagtctaatttgaataatattctaagaactgtgtattactgtctttctcccatgatacttttcatcaacttgtggcctgtcgattctttcccatcatatttgttgctcaagatggtgcttgttgcatttcatttccaaatctatttag
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TACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAGGAAGCAAACAATCAGATAGTTGAACACCTGAAAATAAAGgtttgaggttctatttttcatggctgt----gaattgttaaatcaatgttcct-gaatagtgt--tactctcagcatcctgt-------tgtctgaaattttgacttgacc-ttgattcacag------------------------------------------------------
upper sequence: GRMZM2G030235_T05 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G38530.1 (Glycine max), 5'ss of exon 12
ATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgtttactttttgtggttgatccagtctaatttgaataatattctaagaactgtgtattactgtctttctcccatgatacttttcatcaacttgtggcctgtcgattctttcccatcatatttgttgctcaagatggtgcttgttgcatttcatttccaaatctatttag
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TACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAGgtttgaggttctatttttcatggctgc----gtattgttaaagcaatgttcct-gaatagtgt--tactctcagcatcctgttgtctaaaattttgatttgaccttgattgacag--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60342854|gb|DN209827.1|DN209827EST: ACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGNNNNNNNNG GAGGATGACCTCTCAAAATCCATTGCCTTATGTAATGTGGAATCCAATGTT
genomic: ACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgt ... atctatttagGAGGATGACCTCTCAAAATCCATTGCCTTATGTAATGTGGAATCCAATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGAAAAAAAAGgtgctggtgtttactttttgtggttgatccagtctaatttgaataatattctaagaactgtgtattactgtctttctcccatgatacttttcatcaacttgtggcctgtcgattctttcccatcatatttgttgctcaagatggtgcttgttgcatttcatttccaaatctatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA