Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCTAGATCTATGGTGGGACCAAGCATAACAAGAGGGGTAACCAAAGAAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccag

Basic information

species Zea mays
transcript GRMZM2G149994_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 5'ss of exon 7
ATGTGCTAGATCTATGGTGGGACCAAGCATAACAAGAGGGGTAACCAAAGAAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccag
 | ||||| |||| |||    |   ||  | |||||||||||||| ||||||||| ||  |||||| ||||||||||||||||| ||||||| | | ||||| |   ||  ||  |||| |      | |    |||  |||  ||| ||||| ||||||  | |||| |||
GTCTGCTAAATCTGTGGCCAAAAATAGTGTGACAAGAGGGGTAACTAAAGAAATTCCAGCTGTTTCATGGGATGATATAGGAGGTTTGAAAGCTGTTAAGgtaaaatatgcctcattttaggatttctttaatcaaa--cctcctttaatggttattgttgctatgcttcag

upper sequence: GRMZM2G149994_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 5'ss of exon 3
ATGTGCTAGATCTATGGTGGGACCAAGCATAACAAGAGGGGTAACCAAAGAAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccag
 | ||||| |||| |||    |   ||  | |||||||||||||  ||||||||| ||  |||||| ||||||||||||||||| ||||||| | | ||||| |   ||  ||  |||| |      | |    |||  |||  ||| ||||| ||||||  | |||| |||
GTCTGCTAAATCTGTGGCCAAAAATAGTGTGACAAGAGGGGTAATTAAAGAAATTCCAGCTGTTTCATGGGATGATATAGGAGGTTTGAAAGCTGTTAAGgtaaaatatgcctcattttaggatttctttaatcaaa--cctcctttaatggttattgttgctatgcttcag