1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTTCCCATCGTCAAGTCGCTATCGCTCTCGTCCGGAAGCAAGCCCAACGATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacggcgcgcttgaatgcttgatcatgcagtgcagatgcatgctggttttacattaagatgttaccagtctaataaatcccgctgttatatcaga...
species | Zea mays |
transcript | GRMZM2G086258_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTGEST: gi|71439332|gb|DR820382.1|DR820382
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTG
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTGEST: gi|76292240|gb|DV031808.1|DV031808
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTG
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTGEST: gi|149009322|gb|EE041388.2|EE041388
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTG
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTGEST: gi|149082935|gb|EE172170.2|EE172170
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTG
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTGEST: gi|71431965|gb|DR813015.1|DR813015
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCTGCGAACTCCAGTGCTCTCTTCTTGACAGCAGCTGCACAGAACCTG
EST: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAG GCAGCTTGCGAACTCCAGGGCTCTCTTCTTGACAGCA
genomic: ATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacgg ... tgattgacagGCAGCT-GCGAACTCCAGTGCTCTCTTCTTGACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCCCATCGTCAAGTCGCTATCGCTCTCGTCCGGAAGCAAGCCCAACGATCCATCGGCGAAGAAACTCGGCTCTTATCTTGTGCAATCGCAGTTACAGgtaacaacggcgcgcttgaatgcttgatcatgcagtgcagatgcatgctggttttacattaagatgttaccagtctaataaatcccgctgttatatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA