1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGGCTGTCCCACAAGTTGACAAGAAAATGCTTGGTGAACTTGAAGCCATGGGATTCCCAACTGCACGTTCAGTTAGGGCACTCCATTTTTCAGgtatgccttttcaaacaaacttgctaggtacaggtttgcattacaatgtttttctttgccaaagacagatcgataatacacaaaatagaaactacacgac...
species | Zea mays |
transcript | GRMZM2G085836_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCAGTGGGATTCCCAACTGCACGTTCAGTTAGRGCACTCCATTTTTCAG GTAATTCCAATCTTGAATCTGCTGTGAACTGGCTTCTGGAACATGAAAGTGEST: gi|211529593|gb|FL367669.1|FL367669
genomic: GCCA-TGGGATTCCCAACTGCACGTTCAGTTAGGGCACTCCATTTTTCAGgtatgccttt ... tcttgttcagGTAATTCCAATCTTGAATCTGCTGTAAACTGGCTTCTGGAACATGAAAGTG
EST: AGCCATGGGATTCCCAACTGCACGTTCAGTTAGGGCACTCCATTTTTCAG GTAATTCCAATCTTGAATCTGCTGTGAACTGGCTTCTGGAACATGAAAGTGEST: gi|160481418|gb|EY254532.1|EY254532
genomic: AGCCATGGGATTCCCAACTGCACGTTCAGTTAGGGCACTCCATTTTTCAGgtatgccttt ... tcttgttcagGTAATTCCAATCTTGAATCTGCTGTAAACTGGCTTCTGGAACATGAAAGTG
EST: ACGTTCAAGTT-GGGCACTCCATTTTTCAG GTAATTCCAATCTTGAATCTGCTGTAAACTGGCTTCTGGAACATGAAAGTG
genomic: ACGTTC-AGTTAGGGCACTCCATTTTTCAGgtatgccttt ... tcttgttcagGTAATTCCAATCTTGAATCTGCTGTAAACTGGCTTCTGGAACATGAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCTGTCCCACAAGTTGACAAGAAAATGCTTGGTGAACTTGAAGCCATGGGATTCCCAACTGCACGTTCAGTTAGGGCACTCCATTTTTCAGgtatgccttttcaaacaaacttgctaggtacaggtttgcattacaatgtttttctttgccaaagacagatcgataatacacaaaatagaaactacacgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaata