Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCACGCAGCCACACGCCGCCGCCTCGCTCTCTGCTCCCCTCTCCATTTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacatccgttctctctggtcactgtcgtttttcgcgtcgtctctccggatctgaccttctgttttcggttcgcag

Basic information

species Zea mays
transcript GRMZM2G010599_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211330996|gb|FK988213.1|FK988213
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211333162|gb|FK988229.1|FK988229
EST:     TTTTCATCTCATTCGGCGCCGCGG--CTCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211328832|gb|FK988196.1|FK988196
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211330993|gb|FK988210.1|FK988210
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|30704600|gb|CD058563.1|CD058563
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211250381|gb|FL431483.1|FL431483
EST:     CCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: CCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211330984|gb|FK988201.1|FK988201
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211335320|gb|FK988232.1|FK988232
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|4730667|gb|AI649833.1|AI649833
EST:     CATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: CATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211328835|gb|FK988199.1|FK988199
EST:     TTTTCCTCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|67020323|gb|CO449072.1|CO449072
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211328828|gb|FK988192.1|FK988192
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|60400231|gb|DN233038.1|DN233038
EST:     CTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: CTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|18176750|gb|BM351683.1|BM351683
EST:     CGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: CGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|67023906|gb|CO452655.1|CO452655
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|30704590|gb|CD058562.1|CD058562
EST:     TCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|89755381|gb|DY685822.1|DY685822
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211333150|gb|FK988217.1|FK988217
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|67022317|gb|CO451066.1|CO451066
EST:     TTTTTATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211333156|gb|FK988223.1|FK988223
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211333161|gb|FK988228.1|FK988228
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211333157|gb|FK988224.1|FK988224
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|67023749|gb|CO452498.1|CO452498
EST:     GCGCCGTGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: GCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211330991|gb|FK988208.1|FK988208
EST:     TTTTCATCTCATTCGGCGCCGCGG--CTCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|32930463|gb|CF035275.1|CF035275
EST:     TTTTCATCTCATTCGGCGCCGCGGCGCCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211330990|gb|FK988207.1|FK988207
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|30307036|gb|CD001709.1|CD001709
EST:     TTTTCATCTCATTCGG-GCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211441107|gb|FL033103.1|FL033103
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211335323|gb|FK988235.1|FK988235
EST:     TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: TTTTCATCTCATTCGGCGCCGCGGCACCCCCTGCTCGTCACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
EST: gi|211254801|gb|FL420516.1|FL420516
EST:     ACTCGCGATGG                         CCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG
genomic: ACTCGCGATGGgtaagcacat ... cggttcgcagCCCGGATCAAGGTGCACGAGCTGCGCGGAAAGAGCAAGACGGATCTGCAAG