1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTTGTCGGAAATCGCGGTTTGTGTGGGAAGCAGATTAATATCACCTGCAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGgtagatctgcttgatctagggttattcattggttgtaaaatgttacattgctctagcattttttaaattgaatgcttgcatttcttgtctgcaaagggtt...
species | Vitis vinifera |
transcript | Vv02s0087g00170.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAACCTCCCATTTTAG ACC-AAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTGEST: gi|122689621|gb|EC941876.1|EC941876
genomic: CAACCTCCCATTTTAGgtagatctgc ... gtacttttagACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTG
EST: CAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAG ACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTGEST: gi|161711470|gb|FC058672.1|FC058672
genomic: CAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGgtagatctgc ... gtacttttagACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTG
EST: ACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAG ACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTG
genomic: ACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGgtagatctgc ... gtacttttagACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTCGGAAATCGCGGTTTGTGTGGGAAGCAGATTAATATCACCTGCAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGgtagatctgcttgatctagggttattcattggttgtaaaatgttacattgctctagcattttttaaattgaatgcttgcatttcttgtctgcaaagggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaggg