1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttcagggttttaacaatttcattgtccagcattttatgattctctgcatggatattgattcatatgtttgttttccaacatgaaccag
species | Vitis vinifera |
transcript | Vv07s0031g02030.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|71875484|gb|DT024539.1|DT024539
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|77587593|gb|DV222966.1|DV222966
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|110357241|gb|EC920641.1|EC920641
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|71876684|gb|DT025739.1|DT025739
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|71875656|gb|DT024711.1|DT024711
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|110379979|gb|EC945210.1|EC945210
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|110723395|gb|EE100657.1|EE100657
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAGEST: gi|71873733|gb|DT022788.1|DT022788
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
EST: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA CCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
genomic: GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttca ... catgaaccagCCTCACTGAGCTTCAAGTGAATTACAATAATGAGCGCTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAAgtaagtttcagggttttaacaatttcattgtccagcattttatgattctctgcatggatattgattcatatgtttgttttccaacatgaaccag
- - - - - - - - - GCTGTT
- - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - GCTGGA