1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTATCCTACTGCTTTAGAGCCTCTGCTACCTCTTCCACGTCCGCCAGTTGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcatttctggcacaaaatatccctttcagtagttgtatatttattttatcttgctgaattgataataaatagagattagtgaagttttggactttt...
species | Vitis vinifera |
transcript | Vv11s0052g01380.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAGGTTCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAG GTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGCEST: gi|27581990|gb|CB004685.1|CB004685
genomic: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcattt ... cctttttcagGTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGC
EST: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAG GTTCAGGGTACAATGATGGTCTTGCAACCAAATACACGGCTCAGCCCCAGCEST: gi|110396701|gb|EC962395.1|EC962395
genomic: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcattt ... cctttttcagGTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGC
EST: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAG GTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGCEST: gi|26263708|gb|CA814771.1|CA814771
genomic: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcattt ... cctttttcagGTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGC
EST: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCAT--CAGTTGGAG GTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGCEST: gi|71883679|gb|DT032734.1|DT032734
genomic: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcattt ... cctttttcagGTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGC
EST: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAG GTTCAGGGTACAATGATGGTCTTGCAACCAGA
genomic: TGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcattt ... cctttttcagGTTCAGGGTACAATGATGGTCTTGCAACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTATCCTACTGCTTTAGAGCCTCTGCTACCTCTTCCACGTCCGCCAGTTGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGgtaagcatttctggcacaaaatatccctttcagtagttgtatatttattttatcttgctgaattgataataaatagagattagtgaagttttggactttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataga