Sequence
atgc intronic sequence ATGC exonic sequenceGATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g57940.2 (Oryza sativa), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattc-tgttaattattgtcatcttttttcttcctcaaccaag
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GATGTCTGCCCATATGGTTGCTTGCATTGCTGTGGAAGCGATATCAATTCTTGAGAAGCTTCACTCTAAAGGgtaaa----atttaaagtcacttgtgcc------tgaaaattatatggagctgcatgga-atttctcttttgttttctatttcattggtgttaac-atttccagtgcatcttatcattg-ccag-
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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GATGTCTCCACATATGGGTGCTTGCATTGCTGTAGAGGCCATTTCAATTCTTGAGAAGCTCCATTCTAAAGGgtaact--tatta-----tctttgtt---ctttatcagg-ttatcct------tagatgcaccattcttaatttatgtttgtag----------------------------------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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GATGACACCTAATATGGTTGCTTGCATTGCTGTAGAGGCAATTTCTATACTTGAGAAACTTCATGCAAAAGGgtaactagtat----atttactgagtttatttgc-------catactgtatctcccgattatttatttattggtaattt------tctgtcag-------------------------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G458035_T01 (Zea mays), 5'ss of exon 5
----------------------------GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgag-tactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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GACTAAACGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTCTAAAGGgtgagctaaaattagctatcttgaacctaacgttcttagatgtatg-tattactattga---tttacactatgatcatctgtttgccag------------------------------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G082099_T01 (Zea mays), 5'ss of exon 1
----------------------------GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgag-tactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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GACTAAATGAGTCAACAATCTCAAACAGGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTCTAAAGGgtgagctaaaattagctatcttgaacctaacgttcttagatgtatg-tattactattga---tttacactatgatcatctgtttgccag------------------------------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgag-tactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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GATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCTTGAGAAGCTCCATTCTAAAGGgtgagctaaaattagctatcttgaacctaacgttcttagatgtatg-tattactgttga---tttacactaagatcatctgtttgccag------------------------------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
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AATGTCACCAAATATGGTTGCGTGCATTGCAGTAGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGGgtaaacccttgtgatagttt----tttcaatcct-----gtcaacctttaacatt--accatttattttggcatggttgtgactgactaatttttattaatgaaactcgtatcattgaattag-
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagt-actattaataattccatgtttcactttctcagaat--catcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag----
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GATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGGgttagttactat--attttttcgtaacttctttgcaaatagtttcattcatttcgctttaactaattacaatgtattatctt--tcactgtactgattgtcatgctatgttccatccccatatcaaactag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 7
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtacta-ttaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattatt----gtcatcttttttcttcctcaaccaag
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GATGTCTCCAAACATGGTAGCATGCATTGCAGTGGAGGCGATATCTATTCTTGAAAAACTGCATATGAAGGGgttagtgcgaatttttgttgtcgccaataaatccatctatttcgaacaaaaatatttacatttgcaccaaaaaattacgccattgctgagctgactgtcatgcattgttcattccctacatcaaacaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861339|gb|DT010394.1|DT010394EST: TGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGG GTTTGTGCATGGAGATGTGAAGCCAGAGAACTTTTTACTTGGTCAACCTGG
genomic: TGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtacta ... ctcaaccaagGTTTGTGCATGGAGATGTGAAGCCAGAGAACTTTTTACTTGGTCAACCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagtactattaataattccatgtttcactttctcagaatcatcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC