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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAAGCCCTTATACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgatgttttgaacttggaataagaattttacgtaggataaaatagaaggtctaaagtacaccaaattttctttgtag

Basic information

species Vitis vinifera
transcript Vv07s0031g02030.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868917|gb|DT017972.1|DT017972
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|71875484|gb|DT024539.1|DT024539
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|77587593|gb|DV222966.1|DV222966
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|110357241|gb|EC920641.1|EC920641
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|71876684|gb|DT025739.1|DT025739
EST:     CGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: CGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|71875656|gb|DT024711.1|DT024711
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|110379979|gb|EC945210.1|EC945210
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|110723395|gb|EE100657.1|EE100657
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
EST: gi|71873733|gb|DT022788.1|DT022788
EST:     TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAG                         GGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA
genomic: TACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgat ... ttctttgtagGGACGAAATATTTATGATGGCTGTTGTCAGCTGGATATTCAATTCTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTCAAGCCCTTATACAGTATCAATCACGCCAGAGTGCTGTTTCTGCAATAAATGCACTTCAGgtgagttgatgttttgaacttggaataagaattttacgtaggataaaatagaaggtctaaagtacaccaaattttctttgtag

- - - - - - - - - - - - - - - - - - - GCTGTT