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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03560.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag
|||||||||||| ||||||||||||||||| ||||||||| | || || || |||||||| || ||||||||||| || || || || || ||  |||||||   ||| |  |  ||  | |||   |   || | | | |  || | |     ||  |||   |      | | || ||    
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccaccttttagta-actaaatagtaactcgagcttgaactctcgtgcag---

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag
 ||||| ||||| || ||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||| || ||||| ||| | ||  ||||||| | ||| | | ||||  |   |    || |    | | ||  | | |    | |   | ||     |  |  | | ||    
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatga-gtaatttttgtaagtggttattgcaccttttcaacaattaaatat---taacttaagttctcatatgcag---

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 12
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag
 ||||| ||||| || ||| | |||||||| ||||| ||| | || ||||| ||||||||||||||||||||||| || ||||| || || ||  ||||||| | ||| | | ||||  | | || |  |    ||      || |      ||   | | | ||| | | | |  |    |||
AATTGTCATGAGAACCGTGCGAAACACAGTTGACACCGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATTGACATCTTTGAGGCTTTTGATGAGgtggctatga-ggaattttttataagtagtt---attgcaccttttcagaaactaaatatta-acctaagttctcatgtg-cag

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 18
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgtttt---atattgtgctgtctctcacaccgatggtattgttcatcag-------
 |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| |||||||| ||||||||  ||||||||   | ||    |     ||    || | |   || | | ||   || |  |    ||| | |  |  |  | | | ||| |          
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACTGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccatttgttgtgtatttcttttctttgtatctcctatcctctttaatgcttaatgaaatattcttttttcgccag

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcat----gaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag-------
 |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| |||||||| ||||||||  ||||||||   | ||      |||  | |       | | ||  |  | || ||| |  |    ||| | | ||  |  | | ||||| |          
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACAGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccgtttgttgtgtatttcttttct-ttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcag

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 17
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgta---gatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag
|||||| |||||||| ||||| ||||| || |||||||||||||| ||||| |||||||| || || || || || |||||||| ||||||||  | ||||||     || |    |||| ||  ||  ||||||  |||      |  ||||  || |     | |   ||  | ||||  | |||
CATTGTGATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATTGATATCTTTGAAGCCTTTGACGAGgtaccaactaactcataatttgtgtcatattttctttatc------tccattgctctttggtagataaatattttcttgtgtaccag

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 16
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttct-caatcatgttttatattgtgctgtctctcacaccgatgg-----tattgttcatcag
|||||| |||||||| ||||| || || || |||||||||||||| ||||| |||||||| || || || || || |||||||| ||||||||  | ||||||   |  |    ||   |   |  | || |    |  |  | | |||     |  ||||      |||       | |||| || |||
CATTGTAATGAGGACTGTGAGAAATACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATCGATATCTTTGAAGCCTTTGACGAGgtatcaacaaactcataatttgtatgtgttatatgtttcttctctttatctccattgctctttggtagataaacatttcttgtgcaccag