Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgcacctaaatttgccaggttgtgtaactatcatactgtactattatattatatgttctaaaaaggaatgcttatcatatttggcatcttctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g03460.1 (Oryza sativa), 5'ss of exon 3
TCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgta---ttgatgcacctaaatttgccaggttgtgtaactatcatactgtactat--------tatattatatgttctaaaaaggaatgcttatcatatttggcatcttctt
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TCTTGGTGGGCAAGCTCACTGGACAGTTGGACTTGTAGCAACCTTGATTTCTATTAGTAGCATTATTGCCGCTGATACATCTGCTTTCCTTTGTGGACGGgtatgttcttttcttctataatgtccagtttgatttcattttttattttagtgtaaagaagatatattattttttttaaaaaata-----tattatcttttgcaa------
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G30030.3 (Glycine max), 5'ss of exon 5
TCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgcacctaaatttgccaggttgtgtaactatcatactgtacta-ttatattatatgt-tctaaaaaggaatgcttatcatatttggcatcttctt
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CCTTGGTGGCCAAGCTCATTGGACAGTTGGTCTTGTGGTAACTTTGATTACCATAAGCAGCGTAATTGCAGCTGATACATTTGCATTTCTTGGTGGCAAGgtatatagacttattggtttgc-aacttagctatgttctctaatttatcacttatttaaagagtatttatatttggtaactgcccatttgtactgtcaatt-
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G06190.1 (Glycine max), 5'ss of exon 4
TCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgcacctaaatttgccaggttgtgtaactatcatactgtactattatattatatgttctaaaaaggaatgcttatcatatttggcatcttctt--
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-CTTGGTGGCCAAGCTCATTGGACAGTTGGTCTTGTGGCAACTTTGATTACCATAAGCAGCGTTATTGCAGCGGATACATTTGCATTTCTTGGTGGCAAGGtatatagacttattggtttgcaacttagctatgttctcaaatttgtcacttgcttaaagagtatttatatttggtaactgcca-acttgtcctgccatttc
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G45150.3 (Arabidopsis thaliana), 5'ss of exon 4
TCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgcacctaaatttgccaggttgtgtaactatcatactgtactattatattatatgttctaaaaaggaatgcttatcatatttggcatcttctt
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TCTTGGTGGTCAAGCTCATTGGACAGTTGGACTTGTGGCAACATTGATTTCTTTCAGCGGTGTAATTGCGACAGACACATTTGCTTTTCTCGGTGGAAAGgtaacaccaagaatgatacctcacagataagtttttttc-taca--accgctttgaagttggatttaactagaaaatgttgcag----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699872|gb|EE077264.1|EE077264EST: CCATCAGCAGCATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAG GCATTTGGTCGAACACCACTCACCAATATTAGTCCAAAGAAGACATGGGAG
genomic: CTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgc ... tgtaatgcagGCATTTGGTCGAACACCACTCACCAATATTAGTCCAAAGAAGACATGGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGGTGGTCAAGCTCATTGGACAGTGGGTCTTGTGGTAACCTTGATTTCTATCAGCAGTATAATTGCAGCAGATACATATGCTTTTCTTGGGGGCAAGgtattgatgcacctaaatttgccaggttgtgtaactatcatactgtactattatattatatgttctaaaaaggaatgcttatcatatttggcatcttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaat