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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaatttgacattgggtttgatggatttgactttaaggtttgatattctcttatctgatcagttcacttatgttttttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03700.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G37960.1 (Glycine max), 5'ss of exon 4
TTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaatttgacattgggtttgat------ggat--ttgactttaaggtttgatattct------cttatctgatcagttcacttatgttttttgcag
| |||   ||||||   |||||||| |||||| |||| |||||||| || || || ||||| |||||||||||||| ||||||||     |  | ||||||||||||||| ||   | |   |||| |      | ||  | |||| | |  |    |||| |      ||  | |  ||| |||  ||   || || ||||
TGGGCATGTTGAAATCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACTGGACCAATTCCTCCAGAGATTGGAAATTTGACCCAAGTTATGAAAATgtaaaaggaaattattaattaatttgctcttccagaattgtcgactcttaaataaattattttgatggactagtgttttcaattccattgcattctt-gcag

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 3
TTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaatttgacattgggtttg-atggatttgactttaaggtttgatattctcttatctgatcagttcacttatgttttttgcag--------
| |||   |||||    |||||||| |||||| |||| |||||||| || || || ||||| |||||||||||||| ||||||||     |  | ||||||||||||||| ||   | |   | || |        | | | |  | | | ||||| ||    ||   ||    | |  |   |||||         
TGGGCATGTTGAACTCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACAGGACCAATTCCTCCAGAGATTGGAAATTTGACCCAAGTTATGAAAATgtaaaaggaaattattaattaatatgcacttccagaattgtcaactcttaaattcttttgatggacttgtgttttcaattccattgcattcttgcag

upper sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G42770.1 (Glycine max), 5'ss of exon 4
TTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaatttgacattgggtttgatggatttgactttaaggtttgatattctcttatctgatc-agttcacttatgttttttgcag
| ||    ||| ||   |||||||| |||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| ||| | ||       || |||||||||||| ||||    ||  ||| |  | ||   ||     |  ||    | |||| ||  |  || | ||   ||   ||  | | ||
TGGGTGTGTTGGAATCTCTCAAGGTGTTGGATTTGGGAATGAACCAATTAACGGGACCAATTCCTCCAGAGATTGGAAATCTAACCCAAGCTGTGAAAATgtaaaagaaattcagaat--ggtcttcttgaacagatc---aaattattgactctcatacttattcgaatttgtttgcattcct-gtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713409|gb|FC063389.1|FC063389
EST:     ACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAAT                         AAACCTCGAATCCAATGGGTTGAGTGGACGCCTGCCTCCTGAG
genomic: ACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaa ... ttttttgcagAAACCTCGAGTCCAATGGGTTGAGTGGACGCCTGCCTCCTGAG