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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGTTGGGAAAGGGAGGATTTGGGCAAGTGTATGTTGGCCGTCGTGTGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGgtatattttggttttattttttgattattgtgttgatctgtttcttttctttttttctgaaacatatctatctcctattgattttag

Basic information

species Vitis vinifera
transcript Vv09s0002g03680.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g11140.1 (Oryza sativa), 5'ss of exon 2
AAGGAAGTTGGGAAAGGGAGGATTTGGGCAAGTGTATGTTGGCCGTCGTGTGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGgtatattttggttttattttt-tgattattgtgttgatctgtttcttttctttttttctgaaacatatctat-ctcctattgattttag
 || ||| ||||||||||||||||||||||||| |||||||| || ||| | ||  ||     |   |  ||| | ||  ||||  |    ||| |||||||    | |  | | ||     ||  | ||   ||    | |||    | |  |  |   |   ||||  |  ||  | || ||   ||
TAGAAAGCTGGGAAAGGGAGGATTTGGGCAAGTATATGTTGGTCGGCGTATTTCCTCTCCTGGTGTTACCGACAGGACACCTGGAGCAAATGCTTTGGAGgtcagctct--tctaatccggatgtctttttcatttccatatttaaaatatcatagttgcatttatattcacgcttttctttataccag

upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 2
AAGGAAGTTGGGAAAGGGAGGATTTGGGCAAGTGTATGTTGGCCGTCGTGTGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGgtatattttggttttattttttgattattgtgttgatctgtttcttttctttttttctgaaacatatctatctcctattgattttag
 || ||| | ||||||||||| ||||||||||| |||||||| |||||  | ||  ||   | |   |||||| | ||  | ||  |    ||| | |||||          |||||   ||   |    | || |  |||   |  || |   | |   | ||||    | |  | || ||  |||
CAGAAAGCTTGGAAAGGGAGGGTTTGGGCAAGTATATGTTGGTCGTCGCATTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgt---------ctttatgccttctctggaatttttaattgtaattcatcgtagctgcattagcataaacgtttttt-ttcatactag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352777715|gb|FQ466768.1|FQ466768
EST:     TGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAG                         GTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCA
genomic: TGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGgtatattttg ... ttgattttagGTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCA