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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGAATCTTGTGGAATCGAGGGACGTGATTGTTTTCATACTATGGGAGTTCTTCGTGTGAGTTTAGGTTGCTTTgtatcctttgtttaacatgacgacaataattcagatatgatgcttatgaactgtatcatcactgctctgatatggtatacacttggtttccattactactttttcctttgagatttaacatccttaacaataattcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00380.t01
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g42720.1 (Oryza sativa), 5'ss of exon 2
ATCTAGAATCTTGTGGAATCGAGGGACGTGATTGTTTTCATACTATGGGAGTTCTTCGTGTGAGTTTAGGTTGCTTTgtatcctttgtttaacatgacgacaataattcagatatgatgcttatgaactgtatcatcactgctctgatatggtatacacttggtttccattactactttttcctttgag--atttaacatcctt--aacaataattcag------------------------------------------------------------
|| |      |||||||   |  |      | || || ||  ||   ||||| ||||| ||||| ||||||||||||||||||||| |      |||  ||   |||| | ||     ||| ||   ||| ||  | | |||   || |||  |  ||  | |  |   ||   |  ||||| || ||   | ||| ||   ||  || ||||     |                                                            
ATGTGCCGGTTTGTGGAGCAGGAGACTCCAAGTGCTTCCAATCTGGAGGAGTGCTTCGAGTGAGCTTAGGTTGCTTTgtatccttt-tcagttctgaatactgcaattgaaat----cgctaatt--ctgcatgttaattgcgaagacatg-cactcagctagactgttttcagatgttttctttggaactacttagcaaaattgaaagaataggcatgctattatctgtctatggaggagctgtgttccatatgttcattccttatacataagtccag

upper sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 2
ATCTAGAATCTTGTGGAATCGAGGGACGTGATTGTTTTCATACTATGGGAGTTCTTCGTGTGAGTTTAGGTTGCTTTgtatcctttgtttaacatgacgacaataattcagatatgatgcttatgaactgtatcatcactgctctgatatggtatacacttggtttccattactactttttcctttgagatttaacatccttaacaataattcag
|| |  ||  ||||||||  || |||  ||||||||||||| |  |||||||||||||||||||||| || |||| |||||| ||   ||| ||  |     ||  || |      ||  |||   | || | | |   ||| |  | |    | ||| |||                                                     
ATATCAAAGTTTGTGGAAATGAAGGAGATGATTGTTTTCATTCATTGGGAGTTCTTCGTgtgagtttgggatgctatgtatctttcacttatcaaaat--ttatgctttatgatgaatcattacacaatgca-cgtgcgtgcgcgcacaca-cacacaattgt----------------------------------------------------