Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAAATTTTGTGAAACCAGATACTAGTAGAGGAGGCAGTATGGATCCAGGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatgcccgaaatatttaatagactccatatatattactgcttcatgtctttgaacagtttagtaattttttttgtctttttttttttattttcatttgtggagtgtattgtgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 3
CTGCAAATTTTGTGAAACCAGATACTAGTAGAGGAGGCAGTATGGATCCAGGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatgcccgaaatatttaatagactccatatatattactgcttcatgtctttgaacagtttagtaattttttttgtctttttttttttattttcatttgtggagtgtattgtgtgcag
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CTGCTAACTTTGTGAGACCAGATACTAGCAAAGGTGGCAGTATGGATCCTGGTGATTATGTAAAGGTCAAATGTATAGCATCTGGAAGCCCAAGTGAGAGgtaacatgccttccaaactttgcctgtatacattataaatcactgcctttttcctaggaacttctatgtgattcaccattaaattatgagttttttgt--tttgcag----------------
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G01680.1 (Glycine max), 5'ss of exon 6
CTGCAAATTTTGTGAAACCAGATACTAGTAGAGGAGGCAGTATGGATCCAGGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatgcccgaaatatttaatagactccatatatattactgcttcatgtctttgaacagtttagtaattttttttgtctttttttttttattttcatttgtggagtgtattgtgtgcag
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CTGCTAACTTTGTGAGACCAGATACCAGCAAAGGTGGCAGTATGGATCCAGGTGATTATGTGAAGGTCAAATGTGTGGCATCTGGAAGCCCAAGTGAGAGgtaacatatcttccgaaatttgcctatataccttgtaaatccctgcct--tgttcctaggcacttctatg---tgattcaccattaaattatgatttttggttttgtag--------------
upper sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S65_215V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGCAAATTTTGTGAAACCAGATACTAGTAGAGGAGGCAGTATGGATCCAGGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatgcccgaaatatttaatagactccatatata-ttactgct--tcatgtctttgaacagtttagtaattttttttgtctttttttttttattttcatttgtggagtgtattgtgtgcag
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CTGCCAATCTAGTTAAACCGGATACAAGTAAAGGAGGTGGTATGGATCCAGGTGGCTATGTGAAAGTTAAGTGTATAGCTTCTGGACGGCGCGAAGATAGgta--atggtactgtgcttgagcaaaattttcatgtgtaattatgaataatcctgatttgagataagcacgtgatcacttg-atattgttaataataaatttg-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190210|gb|CF609559.1|CF609559EST: GGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAG CGCCCTCGTTAAGGGAGTAGTTTGTACAAAAAACATTAAACACAAGCGCAT
genomic: GGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatg ... ttgtgtgcagCACCCTCGTTAAGGGAGTAGTTTGTACAAAAAACATTAAACACAAGCGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAAATTTTGTGAAACCAGATACTAGTAGAGGAGGCAGTATGGATCCAGGAGCATATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCACATGAGAGgtatgatatgcccgaaatatttaatagactccatatatattactgcttcatgtctttgaacagtttagtaattttttttgtctttttttttttattttcatttgtggagtgtattgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA