1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGACCAGGCAGCTTTCATACTGAGCATACCAAAACGTAAAATGATGGACGAAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacacacatttgtcactttttaaccaagcaaattgttcaatcccatgaagatttatttcacggccttagagaagaaatcaagatgatttaagttt...
species | Vitis vinifera |
transcript | Vv08s0007g07420.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAG GAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACTEST: gi|110690140|gb|EE066980.1|EE066980
genomic: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacac ... atttttacagGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
EST: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAG GAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACTEST: gi|110363759|gb|EC927370.1|EC927370
genomic: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacac ... atttttacagGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
EST: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAG GAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACTEST: gi|110379519|gb|EC944719.1|EC944719
genomic: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacac ... atttttacagGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
EST: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAG GAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACTEST: gi|22012560|gb|BQ797594.1|BQ797594
genomic: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacac ... atttttacagGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
EST: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAG GAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
genomic: AAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacac ... atttttacagGAAAAATGGTCCAAAAATCTCTACATTGCAGCAATTTGTTATGGGCGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCAGGCAGCTTTCATACTGAGCATACCAAAACGTAAAATGATGGACGAAACTCAAGAAACCCTTCGTACCTCTGCCTTCCCAAGCACCCATGTAAAGgtatgaacacacatttgtcactttttaaccaagcaaattgttcaatcccatgaagatttatttcacggccttagagaagaaatcaagatgatttaagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatga