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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAAAAAATGGAGGGAGGGTTTCTATGTCACCTCTATGGCCACCTCAGGGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGgttatctggattttactatgttctcctaatttgttatatggctcctaagcctttattcttcactgattctgttgattaatttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03680.t01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA06G09190.2 (Glycine max), 5'ss of exon 14
AAATAAAAAATGGAGGGAGGGTTTCTATGTCACCTCTATGGCCACCTCAGGGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGgttatctggattttactatgttctcctaatttgtta----tatggctcctaag---cctttattcttcactgattctgttga---ttaatttcag-----------------------------
 || ||||||||||| || || || ||||||||  |||||||||| || ||   ||||||||   |||||||||||||||| || || |||||||| |||||    || |||| |  |  |  |  | |||   ||    | |||| |  ||    ||  | |  || |   ||||| |  |   |||||  |||                             
CAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTTCCGGCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtc--ttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccaggttgtggaacttgatttcttgtatcccag

upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 14
AAATAAAAAATGGAGGGAGGGTTTCTATGTCACCTCTATGGCCACCTCAGGGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGgttatctggattttactatgttctcctaatttgtta----tatggctcctaag---cctttattcttcactgattctgttga---ttaatttcag
 || ||||||||||| || || || ||||||||  |||||||||| || ||   ||||||||   |||||||||||||||| || || |||||||| |||||    || |||| |  |  |  |  | |||   ||    | |||| |  ||    ||  | |  || |   ||||| |  |   |||||  |||
CAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTTCCGGCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtc--ttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737302|gb|EV241423.1|EV241423
EST:     GGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAG                         GTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGG
genomic: GGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGgttatctgga ... ttaatttcagGTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGG
EST: gi|161714228|gb|FC064143.1|FC064143
EST:     GGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAG                         GTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGG
genomic: GGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGgttatctgga ... ttaatttcagGTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGG