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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACATTGTGAGAATCAAGCTTCTCCGAAGCAAACCTGATCACGCCCTTGTTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgatttaatcccctccctcaagtccataacttaaaaccccatccttacatacaagtatggtccaggacgcctcatgcttaactgaaccttacatatt...

Basic information

species Vitis vinifera
transcript Vv07s0031g02030.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868917|gb|DT017972.1|DT017972
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|71875484|gb|DT024539.1|DT024539
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110699011|gb|EE077165.1|EE077165
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110388143|gb|EC952861.1|EC952861
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110358292|gb|EC922401.1|EC922401
EST:     TTCAGAGGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|77587593|gb|DV222966.1|DV222966
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTT
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTT
EST: gi|110357241|gb|EC920641.1|EC920641
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|71876684|gb|DT025739.1|DT025739
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|71875656|gb|DT024711.1|DT024711
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110379979|gb|EC945210.1|EC945210
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110723395|gb|EE100657.1|EE100657
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|87585586|gb|DY474243.1|DY474243
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110358470|gb|EC922705.1|EC922705
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110374190|gb|EC938795.1|EC938795
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110357986|gb|EC921874.1|EC921874
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110380979|gb|EC946286.1|EC946286
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|87585930|gb|DY474443.1|DY474443
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|110371644|gb|EC935759.1|EC935759
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAGCAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCCA
EST: gi|71873733|gb|DT022788.1|DT022788
EST:     TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAG                         GGAGNCA-TGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCC
genomic: TTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgattta ... gcctatatagGGAG-CAATGTTGTTTGGGAAACGGCTGGAGGTGAACTTCTCGAAGTATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACATTGTGAGAATCAAGCTTCTCCGAAGCAAACCTGATCACGCCCTTGTTCAGATGGGAGATGGATTCCAGGCTGAATTGGCTGTACACTTCTTAAAGgtttgatttaatcccctccctcaagtccataacttaaaaccccatccttacatacaagtatggtccaggacgcctcatgcttaactgaaccttacatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatcc