1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTAACAGCTGCAGGGAGTAACATAATGGGAGTGGTCCTTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtcttatgctttcttctattgcagaatgttaaatcctctatatgattttcaattccatccaattcggctcaacaagccttcatctgaaatacattggatttttacatgctactgaagtttaaaaaatttcttaatttctatttgtactttgcag
species | Vitis vinifera |
transcript | Vv05s0062g00890.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAG GAGAAAGTCATCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATAEST: gi|32268050|gb|CD717209.1|CD717209
genomic: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtctta ... tactttgcagGAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATA
EST: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAG GAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATAEST: gi|32271635|gb|CD720794.1|CD720794
genomic: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtctta ... tactttgcagGAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATA
EST: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAG GAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATAEST: gi|27578836|gb|CB001531.1|CB001531
genomic: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtctta ... tactttgcagGAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATA
EST: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAG GAGAAAGTCATCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATA
genomic: TTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtctta ... tactttgcagGAGAAAGTCGTCTTTGTGACATGTGAGGATGATGATAAAATTGCTGATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACAGCTGCAGGGAGTAACATAATGGGAGTGGTCCTTTTGCAAGAACTGCCTCACTTATCACATCTTGGTGTCAGGGCCCGACAGgcaagtcttatgctttcttctattgcagaatgttaaatcctctatatgattttcaattccatccaattcggctcaacaagccttcatctgaaatacattggatttttacatgctactgaagtttaaaaaatttcttaatttctatttgtactttgcag
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAC