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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctccttgctatgcttgttaagattgttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaattatcataattcac...

Basic information

species Vitis vinifera
transcript Vv02s0087g00170.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os03g16010.1 (Oryza sativa), 5'ss of exon 13
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctccttgctatgcttgttaagat--tgttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaattatcataattcac--------------
 ||| | || |||||||| ||| || | |||||| || |    || || ||||| |||||||| || || |||||||||||  | ||||||||||| ||||||||| |      ||||    |  |  |  | |    || ||  | |  | |  |     | | |     | ||||   |||  |  ||   |||||  ||              
TGACGTCTACAGTTTTGGAGTTTTGCTACTTGAAATACTAAGCGGAAAACGACCTACTGATGCATCATTTATTGAAAAGGGATTGAACATTGTTGGATGGgtatgtatgacctttatgtccttccatttcatatccacagttttctgatatgaattacgtatgccttcaattgatttaatgtattc--ttgaaataatctacttgctctgtggcag

upper sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM5G886952_T01 (Zea mays), 5'ss of exon 13
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctccttgctatgcttgttaagattgttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaa-ttatcataattcac
 ||  | || |||||||||||| || | || ||| || |   ||| ||||| || |||||||| || |||||||| ||||| || ||||||||||| ||||||||||    ||||  | || ||   |||  || | ||||   ||| || |    | |    |  |  | |  |      | ||  || || |    || 
TGATGTCTACAGTTTTGGGGTTTTGGTACTCGAAATACTCAGTGGAAAGCGGCCTACTGATGCATCCTTCATTGAGAAGGGACTAAACATTGTTGGATGGgtatgtcc---tgct-cgattattttaatt-cttaaggcttgcatactttct--tctatcgagttggagtaacctgaaaggatcatcttgtcttttggcag

upper sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G34940.2 (Glycine max), 5'ss of exon 13
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctccttgctatgcttgttaagattgttttaagcttatttaccttatatcttctttcatcaggatca-tttccggtaaccaattatcataattcac-
 ||  | ||||| ||||| ||  |||  || |||||  ||  ||| |||||||| || || ||  | |||||||||||||||||||| |||||||| ||||||||||   ||   |    | |||   ||   |  |  ||||   |  | | |  | |||  |     | | |  |     |    ||||  |||||    
TGATGTGTATAGCTTTGGTGTGTTGACACTCGAAGTGCTGAGTGGAAAGCGACCAACAGACGCAGCATTCATTGAAAAGGGCCTCAATATTGTTGGTTGGgtatgtca--ttcacacaaatattagattttagtacaagttatgatctctttctagttttttgtttttttaaataactaaatattttttattttaattttta

upper sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA01G35390.1 (Glycine max), 5'ss of exon 12
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtc-tccttgcta----tgcttgttaagatt-gttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaattatcataattcac
 ||  | ||||| ||||| ||  |||  ||||||||  ||  ||| ||||| || || || ||  | |||||||||||||| ||||| |||||||| |||||||||| | |   | |    ||  | |||  ||  ||| | | ||  ||    || | | || ||| |  |     || |    ||    | ||| |        
TGATGTGTATAGCTTTGGTGTGTTGACACTTGAAGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGgtatgtcattcacacaaatattggattttagtataagttatgatctcgttctagttttttgttttttaaataactaaatattttatattttaatataaac------

upper sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G31420.1 (Arabidopsis thaliana), 5'ss of exon 13
CGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctccttgctatgcttgttaagattgttttaagcttatttaccttatatcttctttcatcaggatcatttccggtaaccaatta-tcataattcac--
|||  | || |||||||||||| || | |||||||| |||  ||||||  |||| || |||||||| ||||| || || ||||| ||| ||||||| ||||||||                  ||||||| ||||    | | |   || |||| || || |  ||   |    |     | |   | | |||| ||| ||  
CGATGTATACAGTTTTGGGGTTTTGGTTCTTGAAGTCTTGAGTGGGAAAAGACCAACCGATGCTTCCTTCATCGAGAAAGGCCTTAACGTTGTTGGTTGGgtatgca--------------aataagattctttt----tcaata--ctgatattttgttacgacaaacttgactaaaaaagcttttgactcatgatttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325544|gb|CD008806.1|CD008806
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|27580887|gb|CB003582.1|CB003582
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|110703464|gb|EE080335.1|EE080335
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|30327001|gb|CD010263.1|CD010263
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|156739111|gb|EV243232.1|EV243232
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|110362579|gb|EC926122.1|EC926122
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|30303383|gb|CB980177.1|CB980177
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|30303577|gb|CB980371.1|CB980371
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
EST: gi|110368197|gb|EC932166.1|EC932166
EST:     GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGG                         TTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA
genomic: GACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGgtatgtctcc ... tgccttgcagTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAA